Accession
MI0001091
Description
Oryza sativa
osa-MIR156l precursor miRNA
Gene family
MIPF0000008;
MIR156
Literature search
122 open access papers mention osa-MIR156l
(668 sentences)
(668 sentences)
Sequence
14803
reads,
10220
reads per million, 2 experiments
gcuagggagcCGACAGAAGAGAGUGAGCAUAuauaguucuuuccuugcauauguggucauauguguguugacugaagagauacauauauauagagagagagaguucaugugcuugaagcuauauguGCUCACUUCUCUUUCUGUCAGCaaauuauc
........((.((((((((((((((((((((((((((...(((...(((((((.(.(((((((((((((.........)))))))))))...........)).).)))))))..)))))))))))))))))).)))).))))))).))........
........((.((((((((((((((((((((((((((...(((...(((((((.(.(((((((((((((.........)))))))))))...........)).).)))))))..)))))))))))))))))).)))).))))))).))........
Structure
gcuaggga C - - ucu cuu u g ----------- gac
gc GACAGAA GAGA GUGAGCAUAuauagu uuc gcauaug g uc auauguguguu u
|| ||||||| |||| ||||||||||||||| ||| ||||||| | || ||||||||||| g
CG CUGUCUU CUCU CACUCGuguauaucg aag cguguac u ag uauauacauag a
cuauuaaa A U U --- -uu u g agagagagaua aga
Annotation confidence
High
Do you think this miRNA is real?
Comments
This sequence is a predicted paralogue of the previously identified miR156 family [1]. It is predicted to target mRNAs coding for Squamosa-promoter Binding Protein (SBP)-like transcription factors.
Genome context
Chr5: 5230609-5230764 [+]
Database links
Mature osa-miR156l-5p
| Accession | MIMAT0001021 |
| Description | Oryza sativa osa-miR156l-5p mature miRNA |
| Sequence | 11 - CGACAGAAGAGAGUGAGCAUA - 31 |
| Evidence | not_experimental |
| Database links |
|
Mature osa-miR156l-3p
| Accession | MIMAT0022866 |
| Description | Oryza sativa osa-miR156l-3p mature miRNA |
| Sequence | 127 - GCUCACUUCUCUUUCUGUCAGC - 148 |
| Evidence |
experimental
Illumina [2] |
| Database links |
|
References
|
