Stem-loop osa-MIR396e

Accession

MI0001703

Description

Oryza sativa osa-MIR396e precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

55 open access papers mention osa-MIR396e
(141 sentences)

Sequence

1916 reads, 1338 reads per million, 2 experiments

gcgggcaugcuuUCCACAGGCUUUCUUGAACUGugaacucguggggguguaugugcucauguugggauuguggucgguggccuccaauucucugaaaagaaagcugaauugucgagcuccccguucugucuuuggucgucucuaccuguugAUGGUUCAAGAAAGCCCAUGGAAAccaugccgc
((((.((((.((((((..((((((((((((((((.(((..(((((((((.....((.((....(((((...((.(((.((.(((((((((.((........))..))))))..)))..))))).)).))))))))))))))))))..))).))))))))))))))))..)))))).))))))))

Structure

    g    c      CA                g   uc         uaugu  u  uguu     ugu  u   u  -c   --      -u  gaa 
gcgg caug uuUCCA  GGCUUUCUUGAACUGu aac  gugggggug     gc ca    gggau   gg cgg gg  cuc  caauuc  cu   a
|||| |||| ||||||  |||||||||||||||| |||  |||||||||     || ||    |||||   || ||| ||  |||  ||||||  ||    
cgcc guac AAAGGU  CCGAAAGAACUUGGUA uug  caucucugc     ug gu    uucug   cu gcc cc  gag  guuaag  ga   a
    -    c      AC                g   uc         -----  -  ----     --u  u   -  uc   cu      uc  aag 

Annotation confidence High

Genome context

Chr4: 34436820-34437003 [+]

Mature osa-miR396e-5p

• Accession: MIMAT0001601
• Description: Oryza sativa osa-miR396e-5p mature miRNA
• Sequence: 13 - UCCACAGGCUUUCUUGAACUG - 33
• Evidence: experimental ; cloned [1], Illumina [2]

Mature osa-miR396e-3p

• Accession: MIMAT0015159
• Description: Oryza sativa osa-miR396e-3p mature miRNA
• Sequence: 152 - AUGGUUCAAGAAAGCCCAUGGAAA - 175
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435


2. PubMed ID: 15805478
   Cloning and characterization of microRNAs from rice
   "Sunkar R, Girke T, Jain PK, Zhu JK"
   "Plant Cell (2005) 17:1397-1411