Stem-loop osa-MIR156j

Accession

MI0000662

Description

Oryza sativa osa-MIR156j precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

119 open access papers mention osa-MIR156j
(652 sentences)

Sequence

542581 reads, 374978 reads per million, 2 experiments

uuggggcggggcgggaucgagcauaugaaaggcgagauuguUGACAGAAGAGAGUGAGCACacggcgcggcggcuagccaucggcgggaugccugcccccgccgcguGCUCGCUCCUCUUUCUGUCAGCaucucucaucacucccucccgcaucccccgccccga
((((((((((((((((..(((...((((.....(((((.((((((((((((((((((((((.(((((.((.(((.((.((((.....)))).)))))))))))).))))))))).))).)))))))))))))))))))..)))..))))))....))))))))))

Structure

          ----      uc   cau    aaggc     u          -   -         a     c  c   u  c    g 
uuggggcggg    gcggga  gag   auga     gagau guUGACAGAA GAG AGUGAGCAC cggcg gg ggc ag cauc g
||||||||||    ||||||  |||   ||||     ||||| |||||||||| ||| ||||||||| ||||| || ||| || |||| c
agccccgccc    cgcccu  cuc   uacu     cucua CGACUGUCUU CUC UCGCUCGug gccgc cc ccg uc guag g
          ccua      cc   -ac    -----     -          U   C         c     -  -   -  c    g 

Annotation confidence High

Genome context

Chr6: 26554795-26554959 [+]

Mature osa-miR156j-5p

• Accession: MIMAT0000627
• Description: Oryza sativa osa-miR156j-5p mature miRNA
• Sequence: 42 - UGACAGAAGAGAGUGAGCAC - 61
• Evidence: not_experimental

Mature osa-miR156j-3p

• Accession: MIMAT0022850
• Description: Oryza sativa osa-miR156j-3p mature miRNA
• Sequence: 108 - GCUCGCUCCUCUUUCUGUCAGC - 129
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176