Stem-loop osa-MIR169r

Accession

MI0006973

Description

Oryza sativa osa-MIR169r precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

60 open access papers mention osa-MIR169r
(333 sentences)

Sequence

92 reads, 69 reads per million, 2 experiments

aggccaucuucgaUAGCCAAGGAUGAUUUGCCUGuagccccauugucaucagcucucuccgucgagagcgacaaccgggcucuacUGGCAAGUCUCCUCGGCUACCcgaguaccucuuaugcuauccca
(((....(((.(.(((((.((((.((((((((.(((((((..(((((....((((((......)))))))))))..)))))..)).)))))))))))).))))).).)))..)))..............

Structure

--------------   ccau   c a     A    U        U  --     ca     auca      uc 
              agg    cuu g UAGCC AGGA GAUUUGCC Gu  agccc  uuguc    gcucuc  c
              |||    ||| | ||||| |||| |||||||| ||  |||||  |||||    ||||||   
              ucc    gag C AUCGG UCCU CUGAACGG ca  ucggg  aacag    cgagag  g
acccuaucguauuc   --au   c C     C    -        U  uc     cc     ----      cu 

Annotation confidence High

Genome context

Chr3: 35782416-35782544 [+]

Mature osa-miR169r-3p

• Accession: MIMAT0005967
• Description: Oryza sativa osa-miR169r-3p mature miRNA
• Sequence: 86 - UGGCAAGUCUCCUCGGCUACC - 106
• Evidence: experimental ; MPSS [1], Northern [1], cloned [2]

Mature osa-miR169r-5p

• Accession: MIMAT0026762
• Description: Oryza sativa osa-miR169r-5p mature miRNA
• Sequence: 14 - UAGCCAAGGAUGAUUUGCCUG - 34
• Evidence: not_experimental

References

1. PubMed ID: 18312648
   Identification of novel and candidate miRNAs in rice by high throughput sequencing
   Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
   BMC Plant Biol (2008) 8:25


2. PubMed ID: 18353984
   Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
   "Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ"
   "Proc Natl Acad Sci U S A (2008) 105:4951-4956