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miRBase |
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Stem-loop sequence osa-MIR169r |
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Accession | MI0006973 (change log) | ||||
Description | Oryza sativa miR169r stem-loop | ||||
Gene family | MIPF0000012; MIR169_1 | ||||
Literature search |
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60 open access papers mention osa-MIR169r | ||||
Stem-loop |
-------------- ccau c a a u u -- ca auca uc 5' agg cuu g uagcc agga gauuugcc gu agccc uuguc gcucuc c ||| ||| | ||||| |||| |||||||| || ||||| ||||| |||||| 3' ucc gag c aucgg uccu cugaacgg ca ucggg aacag cgagag g acccuaucguauuc --au c c c - u uc cc ---- cu |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Database links |
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Mature sequence osa-miR169r-5p |
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Accession | MIMAT0026762 |
Sequence |
14 - uagccaaggaugauuugccug - 34 |
Deep sequencing | 1234 reads, 2 experiments |
Evidence | not experimental |
Database links |
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Mature sequence osa-miR169r-3p |
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Accession | MIMAT0005967 |
Sequence |
86 - uggcaagucuccucggcuacc - 106 |
Deep sequencing | 43 reads, 2 experiments |
Evidence | experimental; MPSS [1], Northern [1], cloned [2] |
Database links |
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References |
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1 |
PMID:18353984
"Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)"
Proc Natl Acad Sci U S A. 105:4951-4956(2008).
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2 |
PMID:18312648
"Identification of novel and candidate miRNAs in rice by high throughput sequencing"
BMC Plant Biol. 8:25(2008).
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