miRBase entry: osa-MIR444c

Stem-loop osa-MIR444c


Accession
MI0006975
Description
Oryza sativa osa-MIR444c precursor miRNA
Gene family
MIPF0000402; MIR444

Literature search
25 open access papers mention osa-MIR444c
(78 sentences)

Sequence

5984 reads, 4181 reads per million, 2 experiments
aguugcugcaaguggaggcggcaagcuagagacagcaacugcauaucuugcaagaaaaucgguuuuauggccauaccgaugauuuucuugcaagcugUGCAGUUGUUGUCUCAAGCUUGCUGCCucccuuugccagaa
.....(((((((.((((((((((((((.(((((((((((((((((.(((((((((((((((((...........))))))...))))))))))).))))))))))))))))).)))))))))))))).)))).)))..

Structure
aguug   -    u              a                 u           ---      uuua 
     cug caag ggaggcggcaagcu gagacagcaacugcaua cuugcaagaaa   aucggu    u
     ||| |||| |||||||||||||| ||||||||||||||||| |||||||||||   ||||||    g
     gac guuu ccuCCGUCGUUCGA CUCUGUUGUUGACGUgu gaacguucuuu   uagcca    g
---aa   c    c              A                 c           uag      uacc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature osa-miR444c.2

Accession MIMAT0005970
Description Oryza sativa osa-miR444c.2 mature miRNA
Sequence 98 - UGCAGUUGUUGUCUCAAGCUU - 118
Evidence experimental
MPSS [1], Northern [1], cloned [2]
Database links

Mature osa-miR444c.1

Accession MIMAT0005971
Description Oryza sativa osa-miR444c.1 mature miRNA
Sequence 104 - UGUUGUCUCAAGCUUGCUGCC - 124
Evidence experimental
MPSS [1], Northern [1], cloned [2]
Database links

References

  1. PubMed ID: 18312648
    Identification of novel and candidate miRNAs in rice by high throughput sequencing
    Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
    BMC Plant Biol (2008) 8:25

  2. PubMed ID: 18353984
    Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
    "Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ"
    "Proc Natl Acad Sci U S A (2008) 105:4951-4956