miRBase entry: osa-MIR444d

Stem-loop osa-MIR444d


Accession
MI0006976
Description
Oryza sativa osa-MIR444d precursor miRNA
Gene family
MIPF0000402; MIR444

Literature search
23 open access papers mention osa-MIR444d
(73 sentences)

Sequence

628 reads, 455 reads per million, 2 experiments
aguuauugcacaugguggcaccaagcaugaggcaacaacugcauuacuugcaagaaaggcacaaaaucauuagaugauuacUUGUGGCUUUCUUGCAAGUUGUGCAGUUGCUGCCUCAAGCUUGCUGCcucccucugccaaau
.......(((...((.((((.(((((.(((((((.(((((((((.(((((((((((((.(((((((((((...))))))..))))).))))))))))))).))))))))).))))))).))))).)))).))...))).....

Structure
aguuauu   cau  u    c     a       a         u             g     --      u 
       gca   gg ggca caagc ugaggca caacugcau acuugcaagaaag cacaa  aaucau  
       |||   || |||| ||||| ||||||| ||||||||| ||||||||||||| |||||  |||||| a
       cgu   cc cCGU GUUCG ACUCCGU GUUGACGUG UGAACGUUCUUUC GUGUU  uuagua  
--uaaac   cuc  u    C     A       C         U             G     ca      g 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Morin et al identify by high throughput sequencing a product offset from miR444d.3 by 3 nts, named miR444b in [3].

Genome context
Unknown

Database links

Mature osa-miR444d.3

Accession MIMAT0005972
Description Oryza sativa osa-miR444d.3 mature miRNA
Sequence 82 - UUGUGGCUUUCUUGCAAGUUG - 102
Evidence experimental
MPSS [1], Northern [1], cloned [2], 454 [3]
Database links

Mature osa-miR444d.2

Accession MIMAT0005973
Description Oryza sativa osa-miR444d.2 mature miRNA
Sequence 103 - UGCAGUUGCUGCCUCAAGCUU - 123
Evidence experimental
MPSS [1], Northern [1]
Database links

Mature osa-miR444d.1

Accession MIMAT0005974
Description Oryza sativa osa-miR444d.1 mature miRNA
Sequence 108 - UUGCUGCCUCAAGCUUGCUGC - 128
Evidence experimental
MPSS [1], Northern [1]
Database links

References

  1. PubMed ID: 18312648
    Identification of novel and candidate miRNAs in rice by high throughput sequencing
    Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
    BMC Plant Biol (2008) 8:25

  2. PubMed ID: 18353984
    Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
    "Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ"
    "Proc Natl Acad Sci U S A (2008) 105:4951-4956

  3. PubMed ID: 18323537
    Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
    "Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ"
    "Genome Res (2008) 18:571-584