miRBase entry: osa-MIR444f

Stem-loop osa-MIR444f


Accession
MI0006978
Description
Oryza sativa osa-MIR444f precursor miRNA
Gene family
MIPF0000402; MIR444

Literature search
23 open access papers mention osa-MIR444f
(67 sentences)

Sequence

158 reads, 120 reads per million, 2 experiments
augguggcaccaagcaugagguuacaacugcauuacuugcaagggaaucacaagucacaagaaacacauguuauuacaauggauaaucaaugggucaucauacuaugacuuucuugcaaguugUGCAGUUGUUGCCUCAAGCUUgcugccuccg
..((.((((.(((((.((((((.((((((((((.((((((((((((.(((..(((.....((..((...((((((......))))))...))..)).....))).))).)))))))))))).)))))))))).)))))).))))).)))).)).

Structure
au  u    c     a      u          u            a   ca   cacaa  aa  cau      ac 
  gg ggca caagc ugaggu acaacugcau acuugcaaggga uca  agu     ga  ca   guuauu  a
  || |||| ||||| |||||| |||||||||| |||||||||||| |||  |||     ||  ||   ||||||   
  cc ccgu gUUCG ACUCCG UGUUGACGUg ugaacguucuuu agu  uca     cu  gu   uaauag  a
-g  u    c     A      U          u            c   -a   uacua  gg  aac      gu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature osa-miR444f

Accession MIMAT0005976
Description Oryza sativa osa-miR444f mature miRNA
Sequence 124 - UGCAGUUGUUGCCUCAAGCUU - 144
Evidence experimental
MPSS [1], Northern [1], cloned [2]
Database links

References

  1. PubMed ID: 18312648
    Identification of novel and candidate miRNAs in rice by high throughput sequencing
    Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
    BMC Plant Biol (2008) 8:25

  2. PubMed ID: 18353984
    Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
    "Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ"
    "Proc Natl Acad Sci U S A (2008) 105:4951-4956