Stem-loop gga-mir-1416

Accession

MI0006981

Description

Gallus gallus gga-mir-1416 precursor miRNA

Literature search

4 open access papers mention gga-mir-1416
(13 sentences)

Sequence

3700 reads, 62 reads per million, 5 experiments

ugaggcugauacuuuuUCCUUAACUCAUGCCGCUGUGccuuuauauuuuauuucACAAUUGUAUGAGUUGAGUACAgaguaucagucca
((.((((((((((((...((((((((((((...((((....((.....))...))))...))))))))))))...))))))))))))))

Structure

  a            uUC            CGC    ccuu  u 
ug ggcugauacuuu   CUUAACUCAUGC   UGUG    ua a
|| ||||||||||||   ||||||||||||   ||||    || u
ac cugacuaugagA   GAGUUGAGUAUG   ACAc    au u
  -            CAU            UUA    -uuu  u 

Annotation confidence High

Genome context

chrZ: 34922631-34922719 [+]

Mature gga-miR-1416-5p

• Accession: MIMAT0007285
• Description: Gallus gallus gga-miR-1416-5p mature miRNA
• Sequence: 17 - UCCUUAACUCAUGCCGCUGUG - 37
• Evidence: experimental ; cloned [1], 454 [3]

Mature gga-miR-1416-3p

• Accession: MIMAT0007286
• Description: Gallus gallus gga-miR-1416-3p mature miRNA
• Sequence: 55 - ACAAUUGUAUGAGUUGAGUACA - 76
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004


2. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964


3. PubMed ID: 18430245
   Deep sequencing of chicken microRNAs
   Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ, Markis M, Isaacs G, Huang E, Morgan RW
   BMC Genomics (2008) 9:185