Stem-loop osa-MIR1436

Accession

MI0007022

Description

Oryza sativa osa-MIR1436 precursor miRNA

Gene family

MIPF0000344; MIR818

Literature search

13 open access papers mention osa-MIR1436
(45 sentences)

Sequence

185 reads, 60 reads per million, 2 experiments

aguuuaugugcuacucccuccgucccauaauauuaaaaccuaggacuggauaggacguuucauaguacaaugacucagagucauuguacuaugaaacguccuauccaguccuagguuuuaACAUUAUGGGACGGAGGGAGUagucucaaccuauauaaacu
(((((((((((((((((((((((((((((((.(((((((((((((((((((((((((((((((((((((((((((...))))))))))))))))))))))))))))))))))))))))))).))))))))))))))))))))))........)))))))))

Structure

         --------                      a                                           c 
aguuuaugu        gcuacucccuccgucccauaau uuaaaaccuaggacuggauaggacguuucauaguacaaugacu  
|||||||||        |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| a
ucaaauaua        ugaUGAGGGAGGCAGGGUAUUA Aauuuuggauccugaccuauccugcaaaguaucauguuacuga  
         uccaacuc                      C                                           g 

Annotation confidence Not enough data

Genome context

Chr1: 20316586-20316746 [-]

Mature osa-miR1436

• Accession: MIMAT0005987
• Description: Oryza sativa osa-miR1436 mature miRNA
• Sequence: 121 - ACAUUAUGGGACGGAGGGAGU - 141
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 18312648
   Identification of novel and candidate miRNAs in rice by high throughput sequencing
   Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
   BMC Plant Biol (2008) 8:25