Stem-loop sequence gma-MIR167c

Accession

MI0007210 (change log)

Description

Glycine max miR167c stem-loop

Gene family

MIPF0000023; MIR167_1

Literature search

30 open access papers mention gma-MIR167c
(203 sentences)

Stem-loop

   u     a            c  c          --         a   uuuuuuuucucaccucucaugccuaauuuuuaagcaccagucauuagagaaaauaauggugaaaaauccaucuauucaauuuuuuuuuucaaauucaagguuuccaguauguaucacuaauggugaaaaaagugauggaa 
5'  uugag gguugaagcugc ag augaucuggu  aaaucacau cuu                                                                                                                                            u
    ||||| |||||||||||| || ||||||||||  ||||||||| |||                                                                                                                                            u
3'  aacuc cuaacuucgacg uc uacuggacua  uuuggugua gaa                                                                                                                                            u
   u     a            u  -          cc         -   uacuauugguuuaacgggaagaccacccaaaggaaauucauaauuaagguuaaauauucagagaaaauaaagaaccgagucuuugaacuucuuuuacuuuugaguuuuuuuuuuuuucauuuaaauuggguacaagaugu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr7: 39734580-39734954 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0007210

Mature sequence gma-miR167c

• Accession: MIMAT0007355
• Sequence: 11 - ugaagcugccagcaugaucug - 31
• Evidence: experimental; 454 [1]

References

1. PMID:18402695 "Novel and nodulation-regulated microRNAs in soybean roots" Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O BMC Genomics. 9:160(2008).