Stem-loop gma-MIR167c

Accession

MI0007210

Description

Glycine max gma-MIR167c precursor miRNA

Literature search

33 open access papers mention gma-MIR167c
(199 sentences)

Sequence

12626703 reads, 24818.0 reads per million, 178 experiments

uuugagagguUGAAGCUGCCAGCAUGAUCUGguaaaucacauacuuuuuuuuuucucaccucucaugccuaauuuuuaagcaccagucauuagagaaaauaauggugaaaaauccaucuauucaauuuuuuuuuucaaauucaagguuuccaguauguaucacuaauggugaaaaaagugauggaauuuuguagaacauggguuaaauuuacuuuuuuuuuuuuugaguuuucauuuucuucaaguuucugagccaagaaauaaaagagacuuauaaauuggaauuaauacuuaaaggaaacccaccagaagggcaauuugguuaucauaagaugugguuuccaucAGGUCAUCUUGCAGCUUCAAUcacucaau
.(((((.((((((((((((.((.(((((((((((((((((((.(((....(((((((....((..(((.(((...))).)))..))......)))))))..((((........))))...........................(((((((..((.((((((((...))))((((((((((...((((((((...))).)))))....))))))))))....(((.(((((....((((((...((((((......))))))..)))))).....))))).)))...)))).))..))))))).((((((.......))))))......))))))))))))..)))))))))))).)))))))))))).))))).

Structure

u     a            C  C          --         a   uuuuuuuucucaccucucaugccuaauuuuuaagcaccagucauuagagaaaauaauggugaaaaauccaucuauucaauuuuuuuuuucaaauucaa       ag  u    cacuaauggugaaaaaagugauggaauuuuguagaacauggguuaaauuuacuuuuuuuuuu   g     -ucau      caa      ga 
 uugag gguUGAAGCUGC AG AUGAUCUGgu  aaaucacau cuu                                                                                                  gguuucc  ua guau                                                              uuu aguuu     uuucuu   guuucu  g
 ||||| |||||||||||| || ||||||||||  ||||||||| |||                                                                                                  |||||||  || ||||                                                              ||| |||||     ||||||   ||||||   
 aacuc cUAACUUCGACG UC UACUGGAcua  uuuggugua gaa                                                                                                  ccaaagg  au caua                                                              aag uuaaa     agagaa   uaaaga  c
u     a            U  -          cc         -   ------------------------------------------------------------------------uacuauugguuuaacgggaagaccac       aa  u    -----------------------------------------------------------auu   g     uauuc      -aa      ac 

Annotation confidence High

Genome context

chr7: 39734580-39734954 [+]

Mature gma-miR167c-5p

• Accession: MIMAT0007355
• Description: Glycine max gma-miR167c-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUG - 31
• Evidence: experimental ; 454 [1]

Mature gma-miR167c-3p

• Accession: MIMAT0054019
• Description: Glycine max gma-miR167c-3p mature miRNA
• Sequence: 347 - AGGUCAUCUUGCAGCUUCAAU - 367
• Evidence: experimental ; unknown

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160