miRBase entry: gma-MIR169c

Stem-loop gma-MIR169c


Accession
MI0007212
Description
Glycine max gma-MIR169c precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
23 open access papers mention gma-MIR169c
(125 sentences)

Sequence

aagugggaugAAGCCAAGGAUGACUUGCCGAcauuaauuugccauuaagcuaacgaguuagguagaaucauuuguuagauuuucccggcaggucauccucuggcuauauuuggcu
.(((.(((((.(((((((((((((((((((....(((((((............)))))))((.((((((........)))))))))))))))))))))).))))).))))).)))

Structure
a   g     A     -              Acauuaauuugccauuaagcuaacgaguua  u      auu 
 agu ggaug AGCCA AGGAUGACUUGCCG                              gg agaauc   u
 ||| ||||| ||||| ||||||||||||||                              || ||||||    
 ucg uuuau ucggu uccuacuggacggc                              cc uuuuag   g
-   g     a     c              ------------------------------  -      auu 


Annotation confidence Not enough data
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Genome context
chr9: 5343659-5343773 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR169c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR169c

Accession MIMAT0007357
Description Glycine max gma-miR169c mature miRNA
Sequence 11 - AAGCCAAGGAUGACUUGCCGA - 31
Evidence experimental
454 [1], SOLiD [2]

References

  1. PubMed ID: 18402695
    Novel and nodulation-regulated microRNAs in soybean roots
    Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
    BMC Genomics (2008) 9:160

  2. PubMed ID: 21751852
    Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
    "Radwan O, Liu Y, Clough SJ"
    "Mol Plant Microbe Interact (2011) 24:958-972