miRBase entry: gma-MIR390a

Stem-loop gma-MIR390a


Accession
MI0007214
Description
Glycine max gma-MIR390a precursor miRNA
Gene family
MIPF0000101; MIR390

Literature search
21 open access papers mention gma-MIR390a
(85 sentences)

Sequence

agaaucuguaAAGCUCAGGAGGGAUAGCGCCauggaugaucuucucuucacucuugaucuucucuugCGCUAUCCAUCCUGAGUUUCauggcuucuaucuucaca
((((.((((.((((((((((.(((((((((...(((.((((..............)))).)))...))))))))).)))))))))).)))).)))).........

Structure
---------    u    a          G         Cau   u    uucucu 
         agaa cugu AAGCUCAGGA GGAUAGCGC   gga gauc      u
         |||| |||| |||||||||| |||||||||   ||| ||||       
         ucuu ggua UUUGAGUCCU CCUAUCGCg   ucu cuag      c
acacuucua    c    C          A         uuc   u    uucuca 


Annotation confidence Not enough data
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Genome context
chr3: 6398854-6398958 [-]

Database links

Mature gma-miR390a-5p

Accession MIMAT0007359
Description Glycine max gma-miR390a-5p mature miRNA
Sequence 11 - AAGCUCAGGAGGGAUAGCGCC - 31
Evidence experimental
454 [1]

Mature gma-miR390a-3p

Accession MIMAT0007360
Description Glycine max gma-miR390a-3p mature miRNA
Sequence 68 - CGCUAUCCAUCCUGAGUUUC - 87
Evidence experimental
454 [1]

References

  1. PubMed ID: 18402695
    Novel and nodulation-regulated microRNAs in soybean roots
    Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
    BMC Genomics (2008) 9:160