Stem-loop sequence gma-MIR1536

Accession

MI0007234 (change log)

Description

Glycine max miR1536 stem-loop

Gene family

MIPF0001624; MIR1536

Literature search

2 open access papers mention gma-MIR1536
(3 sentences)

Stem-loop

   -------------------------gagaggauagcaauauugucucugcuuuaauuuaucaccacauuccuucucaucucaagagaugcuuugcuuauugu     au  c   g   u   cauau    gu 
5'                                                                                                       gccau  uc caa aga uua     guuu  a
                                                                                                         |||||  || ||| ||| |||     ||||   
3'                                                                                                       cggua  ag guu uuu aau     cgag  a
   guacguacugauuuguguaaacagagacgaacuaacaaauuguuguauggguguauuauauaguagauuuaugagaguacucccguaacauauuuuaaaagu     --  u   g   u   --uuu    ag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr15: 44547119-44547359 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0007234

Mature sequence gma-miR1536

• Accession: MIMAT0007380
• Sequence: 211 - aagcagagacaaauguguuua - 231
• Evidence: experimental; 454 [1]

References

1. PMID:18402695 "Novel and nodulation-regulated microRNAs in soybean roots" Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O BMC Genomics. 9:160(2008).