Stem-loop gma-MIR1536

Accession

MI0007234

Description

Glycine max gma-MIR1536 precursor miRNA

Gene family

MIPF0001624; MIR1536

Literature search

2 open access papers mention gma-MIR1536
(3 sentences)

Sequence

gagaggauagcaauauugucucugcuuuaauuuaucaccacauuccuucucaucucaagagaugcuuugcuuauugugccauauucccaagagauuuacauauguuuguaagagagcuuuuaauuuuguugugaauggcugaaaauuuuauacaaugcccucaugagaguauuuagaugauauauuauguggguauguuguuaaacaaucAAGCAGAGACAAAUGUGUUUAgucaugcaug
((..(((((.((...((((((((((((((((.(((..((((((......((((((....(((((((((((..((((((((((..((.(((.(((.(((.....((((......))))...))).))).))).)))))))............))))))).......)))))))))))))))......))))))..)))..)))).......)))))))))))).)))))))..)).......

Structure

-------  ga     g  aua            -------    -u   ca      uccuuc      caag         -------  uu     ------------     au  c   g   u   cauau    gu 
       ga  ggaua ca   uugucucugcuu       uaau  uau  ccacau      ucaucu    agaugcuuu       gc  auugu            gccau  uc caa aga uua     guuu  a
       ||  ||||| ||   ||||||||||||       ||||  |||  ||||||      ||||||    |||||||||       ||  |||||            |||||  || ||| ||| |||     ||||   
       cu  UUUGU GU   AACAGAGACGAA       auug  gua  ggugua      aguaga    uuuaugaga       cg  uaaca            cggua  ag guu uuu aau     cgag  a
guacgua  gA     -  --A            cuaacaa    uu   ug      uuauau      ----         guacucc  --     uauuuuaaaagu     --  u   g   u   --uuu    ag 

Annotation confidence Not enough data

Genome context

chr15: 44547119-44547359 [-]

Mature gma-miR1536

• Accession: MIMAT0007380
• Description: Glycine max gma-miR1536 mature miRNA
• Sequence: 211 - AAGCAGAGACAAAUGUGUUUA - 231
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160