Stem-loop mdo-mir-1548

Accession

MI0007273

Description

Monodelphis domestica mdo-mir-1548 precursor miRNA

Sequence

5832 reads, 246 reads per million, 3 experiments

gaggAGGGCUCCAGCGGGCACGCACGCgggcuggugUGCAUCCUGCAGCGGGCUCCCCuu
((((.(((((((.(((((.(.((((((......)))))).)))))).).)))))).))))

Structure

    A      - A     C C      gg 
gagg GGGCUC C GCGGG A GCACGC  g
|||| |||||| | ||||| | ||||||   
uuCC CUCGGG G CGUCC U CGUgug  c
    C      C A     - A      gu 

Annotation confidence High

Comments

This sequence is referred to by the unofficial identifier Mdo-305 in [1].

Genome context

chr2: 541547258-541547317 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mdo-mir-1548

Mature mdo-miR-1548-3p

• Accession: MIMAT0006148
• Description: Monodelphis domestica mdo-miR-1548-3p mature miRNA
• Sequence: 37 - UGCAUCCUGCAGCGGGCUCCCC - 58
• Evidence: experimental ; cloned [1], Illumina [2]

Mature mdo-miR-1548-5p

• Accession: MIMAT0026772
• Description: Monodelphis domestica mdo-miR-1548-5p mature miRNA
• Sequence: 5 - AGGGCUCCAGCGGGCACGCACGC - 27
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45