Stem-loop mml-mir-30e

Accession

MI0007602

Description

Macaca mulatta mml-mir-30e precursor miRNA

Literature search

3 open access papers mention mml-mir-30e
(5 sentences)

Sequence

1570659 reads, 12030 reads per million, 8 experiments

gggcagucuucgcuacUGUAAACAUCCUUGACUGGAAGcuguaagguguucagaggagcUUUCAGUCGGAUGUUUACAGCggcaggcugcca
.((((((((..(((.((((((((((((..(((((((((((.(...(....)...).))))))))))))))))))))))).))))))))))).

Structure

g        uc   a            UU           g aag u 
 ggcagucu  gcu cUGUAAACAUCC  GACUGGAAGcu u   g g
 ||||||||  ||| ||||||||||||  ||||||||||| |   |  
 ccgucgga  cgg GACAUUUGUAGG  CUGACUUUcga g   c u
a        --   C            --           g aga u 

Annotation confidence High

Genome context

chr1: 40059281-40059372 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mml-mir-30e

Mature mml-miR-30e-5p

• Accession: MIMAT0006172
• Description: Macaca mulatta mml-miR-30e-5p mature miRNA
• Sequence: 17 - UGUAAACAUCCUUGACUGGAAG - 38
• Evidence: experimental ; Illumina [2]

Mature mml-miR-30e-3p

• Accession: MIMAT0026807
• Description: Macaca mulatta mml-miR-30e-3p mature miRNA
• Sequence: 60 - UUUCAGUCGGAUGUUUACAGC - 80
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18186931
   Identification of novel homologous microRNA genes in the rhesus macaque genome
   Yue J, Sheng Y, Orwig KE
   BMC Genomics (2008) 9:8


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45