Stem-loop sequence mml-mir-377

Accession

MI0007725 (change log)

Description

Macaca mulatta miR-377 stem-loop

Gene family

MIPF0000018; mir-154

Stem-loop

   uu              c   -    a    - uuu 
5'   gagcagagguugcc uug guga uucg c   a
     |||||||||||||| ||| |||| |||| |   u
3'   uuuguuuucaacgg aac cacu aagu g   u
   -g              a   a    -    u uau 

Deep sequencing

1277 reads, 0 reads per million, 9 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Mmul_8.0.1; GCA_000772875.3): chr7: 163395850-163395918 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mml-mir-377

• mml-mir-487a: chr7: 163386465-163386544 [+]
• mml-mir-382: chr7: 163388320-163388395 [+]
• mml-mir-134: chr7: 163388701-163388773 [+]
• mml-mir-668: chr7: 163389270-163389335 [+]
• mml-mir-485: chr7: 163389434-163389506 [+]
• mml-mir-323b: chr7: 163390241-163390297 [+]
• mml-mir-154: chr7: 163393750-163393833 [+]
• mml-mir-496: chr7: 163394601-163394702 [+]
• mml-mir-377: chr7: 163395850-163395918 [+]
• mml-mir-541: chr7: 163398288-163398371 [+]
• mml-mir-409: chr7: 163399096-163399174 [+]
• mml-mir-412: chr7: 163399243-163399333 [+]
• mml-mir-369: chr7: 163399393-163399462 [+]
• mml-mir-410: chr7: 163399706-163399785 [+]
• mml-mir-656: chr7: 163400519-163400596 [+]

Database links

• EntrezGene:MIR377
• RNAcentral:URS000075AF10_9544
• miRBase Tracker:MI0007725

Mature sequence mml-miR-377-5p

• Accession: MIMAT0026864
• Sequence: 7 - agagguugcccuuggugaauuc - 28
• Deep sequencing: 177 reads, 7 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:mml-miR-377-5p

Mature sequence mml-miR-377-3p

• Accession: MIMAT0006306
• Sequence: 45 - aucacacaaaggcaacuuuugu - 66
• Deep sequencing: 1100 reads, 9 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000007F792_9544
• Predicted targets:
  • TargetScanVert:mml-miR-377-3p

References

1. PMID:18186931 "Identification of novel homologous microRNA genes in the rhesus macaque genome" Yue J, Sheng Y, Orwig KE BMC Genomics. 9:8(2008).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).