Stem-loop vvi-MIR399f

Accession

MI0007962

Description

Vitis vinifera vvi-MIR399f precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention vvi-MIR399f
(10 sentences)

Sequence

guugcauuagagggccaaaucugcuuuggcaugaagcccauuuagcaggcucgucugugucugcagucuucucgcUGCCGAAGGAGAUUUGUCCUGcaauucuucug
((((((.....((((.((((((.((((((((.((((...(((..((((((........)))))))))))))....)))))))).)))))))))))))))).......

Structure

-------      uuaga    c      g        ---u    ccc   ua      ucg 
       guugca     gggc aaaucu cuuuggca    gaag   auu  gcaggc   u
       ||||||     |||| |||||| ||||||||    ||||   |||  ||||||    
       uaacGU     CCUG UUUAGA GAAGCCGU    cuuc   uga  cgucug   c
gucuucu      -----    -      G        cgcu    ---   --      ugu 

Annotation confidence Not enough data

Genome context

chr10: 2995807-2995913 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from vvi-MIR399f

Mature vvi-miR399f

• Accession: MIMAT0006567
• Description: Vitis vinifera vvi-miR399f mature miRNA
• Sequence: 76 - UGCCGAAGGAGAUUUGUCCUG - 96
• Evidence: not_experimental

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467