Stem-loop sequence osa-MIR1428c

Accession

MI0008237 (change log)

Description

Oryza sativa miR1428c stem-loop

Gene family

MIPF0000575; MIR1428

Literature search

5 open access papers mention osa-MIR1428c
(21 sentences)

Stem-loop

           a    a u                ca   cc    c       u aa  g    --   g     
5' gcuucagu gguu g gcacuuugcgaauucg  ggc  uauc uguggua g  cu agua  cgc auaa 
   |||||||| |||| | ||||||||||||||||  |||  |||| ||||||| |  || ||||  ||| ||| u
3' ugaaguca ccaa c ugugaaacgcuuaagu  ccg  auag auaccau c  gg uuau  gug uauu 
           c    a u                -a   ua    a       u gg  a    ac   g     

Deep sequencing

10 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr2: 2535020-2535161 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0008237

Mature sequence osa-miR1428c

• Accession: MIMAT0007782
• Sequence: 98 - uaagauaaugccaugaauucg - 118
• Deep sequencing: 4 reads, 2 experiments
• Evidence: experimental; 454 [1]

References

1. PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).