miRBase entry: osa-MIR1428c

Stem-loop osa-MIR1428c


Accession
MI0008237
Description
Oryza sativa osa-MIR1428c precursor miRNA
Gene family
MIPF0000575; MIR1428

Literature search
5 open access papers mention osa-MIR1428c
(21 sentences)

Sequence

4 reads, 2 reads per million, 2 experiments
gcuucaguagguuagugcacuuugcgaauucgcaggcccuauccugugguaugaacugaguacgcgauaauuuauggugcauauuaggggcuuaccaUAAGAUAAUGCCAUGAAUUCGcaaaguguucaaacccacugaagu
((((((((.((((.(.((((((((((((((((..(((..((((.(((((((.(..((.(((((((.(((...))).)))..)))).))..).))))))).))))..))).)))))))))))))))).).)))).))))))))

Structure
        a    a u                ca   cc    c       u aa  g    --   g   a 
gcuucagu gguu g gcacuuugcgaauucg  ggc  uauc uguggua g  cu agua  cgc aua  
|||||||| |||| | ||||||||||||||||  |||  |||| ||||||| |  || ||||  ||| ||| u
ugaaguca ccaa c ugugaaacGCUUAAGU  CCG  AUAG AUaccau c  gg uuau  gug uau  
        c    a u                -A   UA    A       u gg  a    ac   g   u 


Annotation confidence Not enough data
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Genome context
Chr2: 2535020-2535161 [+]

Database links

Mature osa-miR1428c

Accession MIMAT0007782
Description Oryza sativa osa-miR1428c mature miRNA
Sequence 98 - UAAGAUAAUGCCAUGAAUUCG - 118
Evidence experimental
454 [1]

References

  1. PubMed ID: 18687877
    A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
    "Genome Res (2008) 18:1456-1465