Stem-loop osa-MIR1860

Accession

MI0008245

Description

Oryza sativa osa-MIR1860 precursor miRNA

Literature search

4 open access papers mention osa-MIR1860
(4 sentences)

Sequence

55 reads, 38 reads per million, 2 experiments

ucuugauuugaugguaggguuaguguuauuuguaaagAGAAAACCAGCUUCCAGAUCUcgaauuugccucaaacuuaucuucucuuguagAUCUGGAAGCUAGGUUUUCUCUuuacaaauaacacuauuuuuucccccauuaggucug
....((((((((((..(((.(((((((((((((((((((((((((((((((((((((((((.......................))).))))))))))))).)))))))))))))))))))))))))......)))))))))))))..

Structure

ucuu          ua   -----u                         -             -   auuugccuca 
    gauuugaugg  ggg      uaguguuauuuguaaagAGAAAACC AGCUUCCAGAUCU cga          a
    ||||||||||  |||      ||||||||||||||||||||||||| ||||||||||||| |||          a
    cuggauuacc  ccc      aucacaauaaacauuUCUCUUUUGG UCGAAGGUCUAga guu          c
--gu          --   uuuuuu                         A             u   cucuucuauu 

Annotation confidence Not enough data

Genome context

Chr1: 934420-934567 [-]

Mature osa-miR1860-5p

• Accession: MIMAT0007793
• Description: Oryza sativa osa-miR1860-5p mature miRNA
• Sequence: 38 - AGAAAACCAGCUUCCAGAUCU - 58
• Evidence: experimental ; 454 [1]

Mature osa-miR1860-3p

• Accession: MIMAT0007794
• Description: Oryza sativa osa-miR1860-3p mature miRNA
• Sequence: 91 - AUCUGGAAGCUAGGUUUUCUCU - 112
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465