miRBase entry: osa-MIR1860

Stem-loop osa-MIR1860


Accession
MI0008245
Description
Oryza sativa osa-MIR1860 precursor miRNA

Literature search
4 open access papers mention osa-MIR1860
(4 sentences)

Sequence

55 reads, 47 reads per million, 2 experiments
ucuugauuugaugguaggguuaguguuauuuguaaagAGAAAACCAGCUUCCAGAUCUcgaauuugccucaaacuuaucuucucuuguagAUCUGGAAGCUAGGUUUUCUCUuuacaaauaacacuauuuuuucccccauuaggucug
....((((((((((..(((.(((((((((((((((((((((((((((((((((((((((((.......................))).))))))))))))).)))))))))))))))))))))))))......)))))))))))))..

Structure
ucuu          ua   -----u                         -             -   auuugccuca 
    gauuugaugg  ggg      uaguguuauuuguaaagAGAAAACC AGCUUCCAGAUCU cga          a
    ||||||||||  |||      ||||||||||||||||||||||||| ||||||||||||| |||          a
    cuggauuacc  ccc      aucacaauaaacauuUCUCUUUUGG UCGAAGGUCUAga guu          c
--gu          --   uuuuuu                         A             u   cucuucuauu 


Annotation confidence Not enough data
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Genome context
Chr1: 934420-934567 [-]

Database links

Mature osa-miR1860-5p

Accession MIMAT0007793
Description Oryza sativa osa-miR1860-5p mature miRNA
Sequence 38 - AGAAAACCAGCUUCCAGAUCU - 58
Evidence experimental
454 [1]
Database links

Mature osa-miR1860-3p

Accession MIMAT0007794
Description Oryza sativa osa-miR1860-3p mature miRNA
Sequence 91 - AUCUGGAAGCUAGGUUUUCUCU - 112
Evidence experimental
454 [1]
Database links

References

  1. PubMed ID: 18687877
    A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
    "Genome Res (2008) 18:1456-1465