miRBase entry: osa-MIR812j

Stem-loop osa-MIR812j


Accession
MI0008299
Description
Oryza sativa osa-MIR812j precursor miRNA
Gene family
MIPF0000345; MIR812

Literature search
10 open access papers mention osa-MIR812j
(17 sentences)

Sequence

529 reads, 400 reads per million, 2 experiments
agagugcauccuuggucuuggauaguacuuccuuugucccaaaauaagcguagccaugaguuuucuuguccaacuuuaauuguucgucuuauuuaauuuuuuuuugaaaaaacuaaaaaacacaagucacgcauaaacuacuauucauguuuuauaaucuaauaacaauaaaaauacuaaucauacaaaaauuucaaauAAGACGGAUGAUUAAAGUUGGACAcggaaacucauggcugcguuuauuuugugacggagagaguacuauuggaaagaucagcuaguuggaaaaugcca
...(.((((((((((((((.((((((((((.(((((((.((((((((((((((((((((((((((.(((((((((((((((((((((((((((((((((((...(((.................(((.........)))..((((..((((((((......)))).))))..))))....)))...)))))))..)))))))))))))))))))))))))))).)))))))))))))))))))))))))).))))))).))))))))))...))))))))......)))...)))).

Structure
aga u   ---   ------        --g          c       c                          u                            --       uuu   aaaaacuaaaaaacacaagucacgcauaaacuac    ca    -    aa 
   g gca   ucc      uuggucuu   gauaguacuu cuuuguc caaaauaagcguagccaugaguuuuc uguccaacuuuaauuguucgucuuauuu  aauuuuu   uga                                  uauu  uguu uuau  u
   | |||   |||      ||||||||   |||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||   |||                                  ||||  |||| ||||   
   c cgu   agg      gacuagaa   uuaucaugag gaggcag guuuuauuugcgucgguacucaaagg ACAGGUUGAAAUUAGUAGGCAGAAuaaa  uuaaaaa   acu                                  auaa  auaa aaua  c
--a -   aaa   uugauc        agg          a       u                          c                            cu       cau   ------------------------------aauc    aa    c    au 


Annotation confidence Not enough data
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Genome context
Chr8: 19806333-19806629 [+]

Database links

Mature osa-miR812j

Accession MIMAT0007850
Description Oryza sativa osa-miR812j mature miRNA
Sequence 200 - AAGACGGAUGAUUAAAGUUGGACA - 223
Evidence experimental
454 [1]
Database links

References

  1. PubMed ID: 18687877
    A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
    "Genome Res (2008) 18:1456-1465