miRBase entry: osa-MIR812j

Dead hairpin entry

Stem-loop osa-MIR812j


Accession
MI0008299
Description
Oryza sativa osa-MIR812j precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search
10 open access papers mention osa-MIR812j
(17 sentences)

Sequence

264271 reads, 1082.0 reads per million, 142 experiments
agagugcauccuuggucuuggauaguacuuccuuugucccaaaauaagcguagccaugaguuuucUUGUCCAACUUUAAUUGUUCGUCUuauuuaauuuuuuuuugaaaaaacuaaaaaacacaagucacgcauaaacuacuauucauguuuuauaaucuaauaacaauaaaaauacuaaucauacaaaaauuucaaauAAGACGGAUGAUUAAAGUUGGACAcggaaacucauggcugcguuuauuuugugacggagagaguacuauuggaaagaucagcuaguuggaaaaugcca
...(.((((((((((((((.((((((((((.(((((((.((((((((((((((((((((((((((.(((((((((((((((((((((((((((((((((((...(((.................(((.........)))..((((..((((((((......)))).))))..))))....)))...)))))))..)))))))))))))))))))))))))))).)))))))))))))))))))))))))).))))))).))))))))))...))))))))......)))...)))).

Structure
aga u   ---   ------        --g          c       c                          U                            --       uuu   aaaaacuaaaaaacacaagucacgcauaaacuac    ca    -    aa 
   g gca   ucc      uuggucuu   gauaguacuu cuuuguc caaaauaagcguagccaugaguuuuc UGUCCAACUUUAAUUGUUCGUCUuauuu  aauuuuu   uga                                  uauu  uguu uuau  u
   | |||   |||      ||||||||   |||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||   |||                                  ||||  |||| ||||   
   c cgu   agg      gacuagaa   uuaucaugag gaggcag guuuuauuugcgucgguacucaaagg ACAGGUUGAAAUUAGUAGGCAGAAuaaa  uuaaaaa   acu                                  auaa  auaa aaua  c
--a -   aaa   uugauc        agg          a       u                          c                            cu       cau   ------------------------------aauc    aa    c    au