Stem-loop sly-MIR1919c

Accession

MI0008356

Description

Solanum lycopersicum sly-MIR1919c precursor miRNA

Gene family

MIPF0000582; MIR1919

Literature search

6 open access papers mention sly-MIR1919c
(14 sentences)

Sequence

gccuuugauguucacaucuuccgguaguccUGUCGCAGAUGACUUUCGCCCauuuauagaaccacacuuucuuuaauuugaauucuaugugguaggACGAGAGUCAUCUGUGACAGGauaauggaagaucgaguuaucaaaggc
((((((((((.....((((((((...((((((((((((((((((((((((..........((((((..(((........))).....)))))).)).))))))))))))))))))))))..)))))))).....))))))))))

Structure

          uucac        gua                      -  Cauuuauaga      ---cu   uuu 
gccuuugaug     aucuuccg   guccUGUCGCAGAUGACUUUCG CC          accaca     uuc   a
||||||||||     ||||||||   |||||||||||||||||||||| ||          ||||||     |||    
cggaaacuau     uagaaggu   uaGGACAGUGUCUACUGAGAGC gg          uggugu     aag   a
          ugagc        -aa                      A  ---------a      aucuu   uuu 

Annotation confidence Not enough data

Genome context

chr8: 56567231-56567374 [+]

Mature sly-miR1919c-3p

• Accession: MIMAT0007913
• Description: Solanum lycopersicum sly-miR1919c-3p mature miRNA
• Sequence: 97 - ACGAGAGUCAUCUGUGACAGG - 117
• Evidence: experimental ; 454 [1], Illumina [2]

Mature sly-miR1919c-5p

• Accession: MIMAT0032040
• Description: Solanum lycopersicum sly-miR1919c-5p mature miRNA
• Sequence: 31 - UGUCGCAGAUGACUUUCGCCC - 51
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609


2. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739