miRBase entry: ptr-mir-1272

Stem-loop ptr-mir-1272


Accession
MI0008473
Description
Pan troglodytes ptr-mir-1272 precursor miRNA
Gene family
MIPF0000645; mir-1272


Sequence

ccagaucagaucugggugcGAUGAUGAUGGCAGCAAAUUCUGAAAacgugcucagugucuuuauaacaggaaagucguaaacuuagaaauguaggcugcagcucgugugcucuguggucugggcuggu
((((..((((((.((((((.((((.....(((((...((((((..(((.(((...(((.......)))....))))))....))))))......)))))...))))))))))...))))))..)))).

Structure
-    au      --u      G    UGAUG     ---AAA      --AA   u   -cag   cu 
 ccag  cagauc   gggugc AUGA     GCAGC      UUCUGA    acg gcu    ugu  u
 ||||  ||||||   |||||| ||||     |||||      ||||||    ||| |||    |||  u
 gguc  gucugg   cucgug ugcu     cgucg      aagauu    ugc uga    aca  a
u    gg      ugu      -    --cga     gaugua      caaa   -   aagg   au 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr15: 45605910-45606037 [-]

Database links

Mature ptr-miR-1272

Accession MIMAT0007993
Description Pan troglodytes ptr-miR-1272 mature miRNA
Sequence 20 - GAUGAUGAUGGCAGCAAAUUCUGAAA - 45
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70