Stem-loop ptr-mir-1272

Accession

MI0008473

Description

Pan troglodytes ptr-mir-1272 precursor miRNA

Sequence

ccagaucagaucugggugcGAUGAUGAUGGCAGCAAAUUCUGAAAacgugcucagugucuuuauaacaggaaagucguaaacuuagaaauguaggcugcagcucgugugcucuguggucugggcuggu
((((..((((((.((((((.((((.....(((((...((((((..(((.(((...(((.......)))....))))))....))))))......)))))...))))))))))...))))))..)))).

Structure

-    au      --u      G    UGAUG     ---AAA      --AA   u   -cag   cu 
 ccag  cagauc   gggugc AUGA     GCAGC      UUCUGA    acg gcu    ugu  u
 ||||  ||||||   |||||| ||||     |||||      ||||||    ||| |||    |||  u
 gguc  gucugg   cucgug ugcu     cgucg      aagauu    ugc uga    aca  a
u    gg      ugu      -    --cga     gaugua      caaa   -   aagg   au 

Annotation confidence Not enough data

Genome context

chr15: 45605910-45606037 [-]

Mature ptr-miR-1272

• Accession: MIMAT0007993
• Description: Pan troglodytes ptr-miR-1272 mature miRNA
• Sequence: 20 - GAUGAUGAUGGCAGCAAAUUCUGAAA - 45
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70