miRBase entry: ptr-mir-134

Stem-loop ptr-mir-134


Accession
MI0008535
Description
Pan troglodytes ptr-mir-134 precursor miRNA
Gene family
MIPF0000112; mir-134


Sequence

agggugUGUGACUGGUUGACCAGAGGGGcaugcacuguguucacccugugggccaccuagucaccaacccuc
(((((..((((((((.((.(((.((((((((.....))))...)))).)))..)).))))))))..))))).

Structure
-     gU        U  -A   G    ---    g 
 agggu  GUGACUGG UG  CCA AGGG   Gcau c
 |||||  |||||||| ||  ||| ||||   |||| a
 uccca  cacugauc ac  ggu uccc   ugug c
c     ac        c  cg   g    acu    u 


Annotation confidence Not enough data
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Genome context
chr14: 86302921-86302992 [+]
Clustered miRNAs
14 other miRNAs are < 10 kb from ptr-mir-134
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-134

Accession MIMAT0008031
Description Pan troglodytes ptr-miR-134 mature miRNA
Sequence 7 - UGUGACUGGUUGACCAGAGGGG - 28
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70