miRBase entry: ptr-mir-302b

Stem-loop ptr-mir-302b


Accession
MI0008600
Description
Pan troglodytes ptr-mir-302b precursor miRNA
Gene family
MIPF0000071; mir-302

Literature search
1 open access papers mention ptr-mir-302b
(6 sentences)

Sequence

gcucccuucaacuuuaacauggaagugcuuucugugacuuuaaaagUAAGUGCUUCCAUGUUUUAGUAGgag
.....((((.(((..(((((((((((((((.((...........)).)))))))))))))))..))).))))

Structure
gcucc    a   uu               u  guga 
     cuuc acu  aacauggaagugcuu cu    c
     |||| |||  ||||||||||||||| ||    u
     gagG UGA  UUGUACCUUCGUGAA ga    u
-----    A   UU               U  aaau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 115711790-115711861 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from ptr-mir-302b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-302b

Accession MIMAT0008087
Description Pan troglodytes ptr-miR-302b mature miRNA
Sequence 47 - UAAGUGCUUCCAUGUUUUAGUAG - 69
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70