miRBase entry: ptr-mir-34b

Stem-loop ptr-mir-34b


Accession
MI0008632
Description
Pan troglodytes ptr-mir-34b precursor miRNA
Gene family
MIPF0000039; mir-34


Sequence

ugcucgguuuguaggcagugucauuagcugauuguacuguggugguuaCAAUCACUAACUCCACUGCCAUcaaaacaaggcac
((((..((((...(((((((...((((.((((((((((.....)).))))))))))))...)))))))....))))..)))).

Structure
-    cg    -gua       uca    c        -  g 
 ugcu  guuu    ggcagug   uuag ugauugua cu u
 ||||  ||||    |||||||   |||| |||||||| || g
 acgg  caaa    CCGUCAC   AAUC ACUAACau gg g
c    aa    acUA       CUC    -        u  u 


Annotation confidence Not enough data
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Genome context
chr11: 111895234-111895316 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-34b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-34b

Accession MIMAT0008113
Description Pan troglodytes ptr-miR-34b mature miRNA
Sequence 49 - CAAUCACUAACUCCACUGCCAU - 70
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70