miRBase entry: ptr-mir-381

Stem-loop ptr-mir-381


Accession
MI0008654
Description
Pan troglodytes ptr-mir-381 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

acuuaaagcgagguugcccuuuguauauucgguuuauugacauggaaUAUACAAGGGCAAGCUCUCUGUgagua
(((((.((.(((.((((((((.((((((((.((........)).)))))))))))))))).))).)).))))).

Structure
-     a  c   g        u        g  uua 
 acuua ag gag uugcccuu guauauuc gu   u
 ||||| || ||| |||||||| |||||||| ||    
 ugagU UC CUC AACGGGAA CAUAUaag ua   u
a     G  U   G        -        g  cag 


Annotation confidence Not enough data
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Genome context
chr14: 86294164-86294237 [+]
Clustered miRNAs
18 other miRNAs are < 10 kb from ptr-mir-381
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-381

Accession MIMAT0008133
Description Pan troglodytes ptr-miR-381 mature miRNA
Sequence 48 - UAUACAAGGGCAAGCUCUCUGU - 69
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70