Stem-loop sequence ptr-mir-516a-2

Accession MI0008706
Description Pan troglodytes miR-516a-2 stem-loop
Gene family MIPF0000020; mir-515
Stem-loop 
-    gg            c    aaa            guug  u 
 cuca  uugugaccuucu gagg   gaagcacuuucu    uc g
 ||||  |||||||||||| ||||   ||||||||||||    || a
 gagu  ggcauugggaga uuuc   cuucgugaaaga    ag a
a    uu            c    ---            --aa  a
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Genome context
Coordinates (PanTro2.1.4) Overlapping transcripts
19: 58670166-58670254 [+]
sense
Clustered miRNAs
< 10kb from ptr-mir-516a-2
ptr-mir-522 19: 58660239-58660324 [+]
ptr-mir-527 19: 58663052-58663137 [+]
ptr-mir-516a-1 19: 58665767-58665855 [+]
ptr-mir-516a-2 19: 58670166-58670254 [+]
ptr-mir-519a 19: 58671376-58671461 [+]
Database links

Mature sequence ptr-miR-516a

Accession MIMAT0008182
Sequence

60 -  

ugcuuccuuucagagggu

 - 77

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Evidence by similarity; MI0003180

References

1
PMID:18760970 "Computational identification of novel microRNA homologs in the chimpanzee genome" Baev V, Daskalova E, Minkov I Comput Biol Chem. 33:62-70(2009).