miRBase entry: ptr-mir-521-1

Stem-loop ptr-mir-521-1


Accession
MI0008731
Description
Pan troglodytes ptr-mir-521-1 precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

cucaggcugugacccuccaaagggaagaacuuucuguugucuaaaagaaaagAACGCACUUCCCUUUAGAGUGUuaccgugugaga
((((.((.(((((.(((.(((((((((..(.((((....(((...)))..)))).)..))))))))).))).))))).)).)))).

Structure
-    g  u     c   c         aa u    guug   a 
 cuca gc gugac cuc aaagggaag  c uucu    ucu  
 |||| || ||||| ||| |||||||||  | ||||    ||| a
 gagu ug cauUG GAG UUUCCCUUC  G AAga    aga  
a    g  c     U   A         AC C    --aa   a 


Annotation confidence Not enough data
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Genome context
chr19: 56096062-56096147 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from ptr-mir-521-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-521

Accession MIMAT0008205
Description Pan troglodytes ptr-miR-521 mature miRNA
Sequence 53 - AACGCACUUCCCUUUAGAGUGU - 74
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70