Stem-loop sequence ptr-mir-521-1

Accession MI0008731
Description Pan troglodytes miR-521-1 stem-loop
Gene family MIPF0000020; mir-515
Stem-loop 
-    g  u     c   c         aa u    guug  u 
 cuca gc gugac cuc aaagggaag  c uucu    uc a
 |||| || ||||| ||| |||||||||  | ||||    || a
 gagu ug cauug gag uuucccuuc  g aaga    ag a
a    g  c     u   a         ac c    --aa  a
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Genome context
Coordinates (PanTro2.1.4) Overlapping transcripts
19: 58656954-58657039 [+]
sense
Clustered miRNAs
< 10kb from ptr-mir-521-1
ptr-mir-518a 19: 58647509-58647594 [+]
ptr-mir-517b-2 19: 58649647-58649712 [+]
ptr-mir-520h 19: 58650839-58650927 [+]
ptr-mir-521-1 19: 58656954-58657039 [+]
ptr-mir-522 19: 58660239-58660324 [+]
ptr-mir-527 19: 58663052-58663137 [+]
ptr-mir-516a-1 19: 58665767-58665855 [+]
Database links

Mature sequence ptr-miR-521

Accession MIMAT0008205
Sequence

53 -  

aacgcacuucccuuuagagugu

 - 74

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Evidence by similarity; MI0003176

References

1
PMID:18760970 "Computational identification of novel microRNA homologs in the chimpanzee genome" Baev V, Daskalova E, Minkov I Comput Biol Chem. 33:62-70(2009).