miRBase entry: ptr-mir-654

Stem-loop ptr-mir-654


Accession
MI0008841
Description
Pan troglodytes ptr-mir-654 precursor miRNA
Gene family
MIPF0000409; mir-654

Literature search
1 open access papers mention ptr-mir-654
(1 sentences)

Sequence

gguaaguggaaagauggugggccgcagaacaugugcugaguucgugccaUAUGUCUGCUGACCAUCACCUUuagaagccc
(((......((((.((((((.(.(((((.(((((((.........).))))))))))).).)))))).))))....))).

Structure
-   aagugg    a      g c     a      - uga 
 ggu      aaag uggugg c gcaga caugug c   g
 |||      |||| |||||| | ||||| |||||| |   u
 ccg      uUUC ACUACC G CGUCU GUAUac g   u
c   --aaga    C      A U     -      c ugc 


Annotation confidence Not enough data
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Genome context
chr14: 86288467-86288546 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from ptr-mir-654
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-654

Accession MIMAT0008304
Description Pan troglodytes ptr-miR-654 mature miRNA
Sequence 50 - UAUGUCUGCUGACCAUCACCUU - 71
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70