Stem-loop ptr-mir-654

Accession

MI0008841

Description

Pan troglodytes ptr-mir-654 precursor miRNA

Literature search

1 open access papers mention ptr-mir-654
(1 sentences)

Sequence

gguaaguggaaagauggugggccgcagaacaugugcugaguucgugccaUAUGUCUGCUGACCAUCACCUUuagaagccc
(((......((((.((((((.(.(((((.(((((((.........).))))))))))).).)))))).))))....))).

Structure

-   aagugg    a      g c     a      - uga 
 ggu      aaag uggugg c gcaga caugug c   g
 |||      |||| |||||| | ||||| |||||| |   u
 ccg      uUUC ACUACC G CGUCU GUAUac g   u
c   --aaga    C      A U     -      c ugc 

Annotation confidence Not enough data

Genome context

chr14: 86288467-86288546 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from ptr-mir-654

Mature ptr-miR-654

• Accession: MIMAT0008304
• Description: Pan troglodytes ptr-miR-654 mature miRNA
• Sequence: 50 - UAUGUCUGCUGACCAUCACCUU - 71
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70