Stem-loop hsv1-mir-H5

Accession

MI0008940

Description

Herpes Simplex Virus 1 hsv1-mir-H5 precursor miRNA

Sequence

gcgcucccucGGGGGGGUUCGGGCAUCUCUACcucagugccgccaaucucagGUCAGAGAUCCAAACCCUCCGGgggcgc
((((((((...((((((((..((.((((((((((.((..........)).)))).)))))))).))))))))))))))))

Structure

        ucG        CG  C      -    c  ugcc 
gcgcuccc   GGGGGGUU  GG AUCUCU ACcu ag    g
||||||||   ||||||||  || |||||| |||| ||     
cgcgggGG   CCUCCCAA  CC UAGAGA UGga uc    c
        ---        -A  -      C    c  uaac 

Annotation confidence Not enough data

Genome context

Unknown

Mature hsv1-miR-H5-5p

• Accession: MIMAT0015280
• Description: Herpes Simplex Virus 1 hsv1-miR-H5-5p mature miRNA
• Sequence: 11 - GGGGGGGUUCGGGCAUCUCUAC - 32
• Evidence: experimental ; Illumina [3]

Mature hsv1-miR-H5-3p

• Accession: MIMAT0008403
• Description: Herpes Simplex Virus 1 hsv1-miR-H5-3p mature miRNA
• Sequence: 53 - GUCAGAGAUCCAAACCCUCCGG - 74
• Evidence: experimental ; 454 [1], qRT-PCR [1], Illumina [2-3]

References

1. PubMed ID: 20181707
   Numerous conserved and divergent microRNAs expressed by herpes simplex viruses 1 and 2
   "Jurak I, Kramer MF, Mellor JC, van Lint AL, Roth FP, Knipe DM, Coen DM"
   "J Virol (2010) 84:4659-4672


2. PubMed ID: 18596690
   MicroRNAs expressed by herpes simplex virus 1 during latent infection regulate viral mRNAs
   "Umbach JL, Kramer MF, Jurak I, Karnowski HW, Coen DM, Cullen BR"
   "Nature (2008) 454:780-783


3. PubMed ID: 19656888
   Analysis of human alphaherpesvirus microRNA expression in latently infected human trigeminal ganglia
   "Umbach JL, Nagel MA, Cohrs RJ, Gilden DH, Cullen BR"
   "J Virol (2009) 83:10677-10683