Stem-loop dse-mir-311

Accession

MI0009361

Description

Drosophila sechellia dse-mir-311 precursor miRNA

Gene family

MIPF0000566; mir-310

Sequence

ucuagauaauuuuuCGGACGGUAUAUGAGUCAAUGUUuucuuuuucgaauaUAUUGCACAUUCACCGGCCUGAaaauaucaaga
(((.((((..(((((((.((((..(((.(.((((((.(((......))).))))))).)))..))))..))))))))))).)))

Structure

   a    au       -A    AU   A U      U   uu 
ucu gaua  uuuuCGG  CGGU  AUG G CAAUGU uuc  u
||| ||||  |||||||  ||||  ||| | |||||| |||   
aga cuau  aaaAGUC  GCCA  UAC C GUUAUa aag  u
   a    --       CG    CU   A -      u   cu 

Annotation confidence Not enough data

Genome context

scaffold_1: 14025606-14025689 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from dse-mir-311

Mature dse-miR-311-3p

• Accession: MIMAT0008799
• Description: Drosophila sechellia dse-miR-311-3p mature miRNA
• Sequence: 52 - UAUUGCACAUUCACCGGCCUGA - 73
• Evidence: experimental ; Illumina [2]

Mature dse-miR-311-5p

• Accession: MIMAT0037343
• Description: Drosophila sechellia dse-miR-311-5p mature miRNA
• Sequence: 15 - CGGACGGUAUAUGAGUCAAUGUU - 37
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250