miRBase entry: dse-mir-312

Stem-loop dse-mir-312

Accession

MI0009372

Description

Drosophila sechellia dse-mir-312 precursor miRNA

Gene family

MIPF0000573; mir-312

Sequence

guuuUGGUUCGUCACAAGGGCAAUUCUgcauuuuuaaacuugUAUUGCACUUGAGACGGCCGAAuu
..((((((.((((.((((.(((((...(((..........)))))))).)))).))))))))))..

Structure

gu      U    A    G     UCU   uuuu 
  uuUGGU CGUC CAAG GCAAU   gca    u
  |||||| |||| |||| |||||   |||     
  AAGCCG GCAG GUUC CGUUA   Ugu    a
uu      -    A    A     ---   ucaa

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

scaffold_1: 14025763-14025828 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from dse-mir-312

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-312-3p

Accession	MIMAT0008810
Description	Drosophila sechellia dse-miR-312-3p mature miRNA
Sequence	43 - UAUUGCACUUGAGACGGCCGAA - 64
Evidence	experimental Illumina [2]

Mature dse-miR-312-5p

Accession	MIMAT0037344
Description	Drosophila sechellia dse-miR-312-5p mature miRNA
Sequence	5 - UGGUUCGUCACAAGGGCAAUUCU - 27
Evidence	experimental Illumina [2]

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250