Stem-loop dsi-mir-312

Accession

MI0009440

Description

Drosophila simulans dsi-mir-312 precursor miRNA

Gene family

MIPF0000573; mir-312

Sequence

guuuUGGUUCGUCACAAGGGCAAUUCUgcauuuuuaaacuugUAUUGCACUUGAGACGGCCGAAuu
..((((((.((((.((((.(((((...(((..........)))))))).)))).))))))))))..

Structure

gu      U    A    G     UCU   uuuu 
  uuUGGU CGUC CAAG GCAAU   gca    u
  |||||| |||| |||| |||||   |||     
  AAGCCG GCAG GUUC CGUUA   Ugu    a
uu      -    A    A     ---   ucaa 

Annotation confidence Not enough data

Genome context

chr2R: 15132849-15132914 [-]

Clustered miRNAs

8 other miRNAs are < 10 kb from dsi-mir-312

Mature dsi-miR-312-5p

• Accession: MIMAT0015282
• Description: Drosophila simulans dsi-miR-312-5p mature miRNA
• Sequence: 5 - UGGUUCGUCACAAGGGCAAUUCU - 27
• Evidence: experimental ; Illumina [2-3]

Mature dsi-miR-312-3p

• Accession: MIMAT0008875
• Description: Drosophila simulans dsi-miR-312-3p mature miRNA
• Sequence: 43 - UAUUGCACUUGAGACGGCCGAA - 64
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9


2. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


3. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250