miRBase entry: dvi-mir-277

Stem-loop dvi-mir-277


Accession
MI0009513
Description
Drosophila virilis dvi-mir-277 precursor miRNA
Gene family
MIPF0000156; mir-277

Literature search
1 open access papers mention dvi-mir-277
(1 sentences)

Sequence

caguuuugggcugCGUGUCAGGAGUGCAUUUGCAcugaaacauucugaaagcuugUAAAUGCACUAUCUGGUACGACAuuccagaacgu
..((((((((.(((((((((((((((((((((((((.............))..)))))))))))).))))))))).)).))))))))..

Structure
ca        c  -         -            --  gaaac 
  guuuuggg ug CGUGUCAGG AGUGCAUUUGCA  cu     a
  |||||||| || ||||||||| ||||||||||||  ||     u
  caagaccu AC GCAUGGUCU UCACGUAAAUgu  ga     u
ug        u  A         A            uc  aaguc 


Annotation confidence Not enough data
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Genome context
scaffold_12855: 2684222-2684310 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from dvi-mir-277
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-277-3p

Accession MIMAT0008946
Description Drosophila virilis dvi-miR-277-3p mature miRNA
Sequence 56 - UAAAUGCACUAUCUGGUACGACA - 78
Evidence experimental
Illumina [2]

Mature dvi-miR-277-5p

Accession MIMAT0032072
Description Drosophila virilis dvi-miR-277-5p mature miRNA
Sequence 14 - CGUGUCAGGAGUGCAUUUGCA - 34
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218

  2. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372