Stem-loop sequence bta-mir-96

Accession

MI0009911 (change log)

Description

Bos taurus miR-96 stem-loop

Gene family

MIPF0000072; mir-96

Literature search

7 open access papers mention bta-mir-96
(26 sentences)

Stem-loop

   ccacuac    -     gg  g cu        a      uu      ---   uc 
5'        cguc ugcuu  cc a  uuggcacu gcacau  uugcuu   gug  u
          |||| |||||  || |  |||||||| ||||||  ||||||   |||   
3'        guag acgaa  gg u  aaccguga cgugua  aacgag   cgc  c
   ------c    g     aa  g au        -      cu      ucu   cu 

Deep sequencing

936 reads, 109 reads per million, 74 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr4: 94724422-94724524 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-96

• bta-mir-183: chr4: 94724660-94724729 [-]
• bta-mir-96: chr4: 94724422-94724524 [-]
• bta-mir-182: chr4: 94719929-94720039 [-]

Database links

• EntrezGene:MIR96
• RNAcentral:URS000075E5D0_9913
• miRBase Tracker:MI0009911

Mature sequence bta-miR-96

• Accession: MIMAT0009388
• Sequence: 24 - uuuggcacuagcacauuuuugcu - 46
• Deep sequencing: 933 reads, 74 experiments
• Evidence: by similarity; MI0000881
• Predicted targets:
  • TargetScanVert:bta-miR-96

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).