Stem-loop spu-mir-200

Accession

MI0010188

Description

Strongylocentrotus purpuratus spu-mir-200 precursor miRNA

Gene family

MIPF0000019; mir-8

Literature search

1 open access papers mention spu-mir-200
(1 sentences)

Sequence

uggugaCAUCAUACUGGACAGCAUUGGAcgugauuggaucguucucUAAUACUGUCUGGUGAUGAUGUUgacacuggcuuu
((..(((((((((((((((((.((((((..((((...))))...)))))).))))))))).))))))))..))........

Structure

--------  gu        -         C      -cg    u 
        ug  gaCAUCAU ACUGGACAG AUUGGA   ugau  
        ||  |||||||| ||||||||| ||||||   |||| g
        ac  UUGUAGUA UGGUCUGUC UAAUcu   gcua  
uuucgguc  ag        G         A      cuu    g 

Annotation confidence Not enough data

Genome context

KN920481.1: 158992-159072 [-]

Mature spu-miR-200-5p

• Accession: MIMAT0013801
• Description: Strongylocentrotus purpuratus spu-miR-200-5p mature miRNA
• Sequence: 7 - CAUCAUACUGGACAGCAUUGGA - 28
• Evidence: experimental ; 454 [1], Illumina [1]

Mature spu-miR-200-3p

• Accession: MIMAT0009652
• Description: Strongylocentrotus purpuratus spu-miR-200-3p mature miRNA
• Sequence: 47 - UAAUACUGUCUGGUGAUGAUGUU - 69
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68


2. PubMed ID: 22216218
   RNA deep sequencing reveals differential microRNA expression during development of sea urchin and sea star
   Kadri S, Hinman VF, Benos PV
   PLoS One (2011) 6:e29217