miRBase entry: spu-mir-92b

Stem-loop spu-mir-92b


Accession
MI0010199
Description
Strongylocentrotus purpuratus spu-mir-92b precursor miRNA
Gene family
MIPF0000013; mir-25

Literature search
2 open access papers mention spu-mir-92b
(2 sentences)

Sequence

ggugauugauggucAAGUCGGACCGAGCGCAAUGUUguuccucuauugagguuuuucgaaUAUUGCACUUGUCCCGGCCUGCucaucaacaccaaaaucau
((((.(((((((.((.(((((..((((.((((((((...((((....)))).......)))))))).))))..))))).)).)))))))))))........

Structure
--------    a       u  A     AC    C        ----guu    u 
        ggug uugaugg cA GUCGG  CGAG GCAAUGUU       ccuc a
        |||| ||||||| || |||||  |||| ||||||||       ||||  
        ccac aacuacu GU CGGCC  GUUC CGUUAUaa       ggag u
uacuaaaa    -       C  C     CU    A        gcuuuuu    u 


Annotation confidence Not enough data
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Genome context
KN917153.1: 421925-422025 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from spu-mir-92b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature spu-miR-92b-3p

Accession MIMAT0009663
Description Strongylocentrotus purpuratus spu-miR-92b-3p mature miRNA
Sequence 61 - UAUUGCACUUGUCCCGGCCUGC - 82
Evidence experimental
454 [1], Illumina [2]

Mature spu-miR-92b-5p

Accession MIMAT0019160
Description Strongylocentrotus purpuratus spu-miR-92b-5p mature miRNA
Sequence 15 - AAGUCGGACCGAGCGCAAUGUU - 36
Evidence experimental
454 [2]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68

  2. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27

  3. PubMed ID: 22216218
    RNA deep sequencing reveals differential microRNA expression during development of sea urchin and sea star
    Kadri S, Hinman VF, Benos PV
    PLoS One (2011) 6:e29217