Stem-loop spu-mir-92b

Accession

MI0010199

Description

Strongylocentrotus purpuratus spu-mir-92b precursor miRNA

Literature search

2 open access papers mention spu-mir-92b
(2 sentences)

Sequence

ggugauugauggucAAGUCGGACCGAGCGCAAUGUUguuccucuauugagguuuuucgaaUAUUGCACUUGUCCCGGCCUGCucaucaacaccaaaaucau
((((.(((((((.((.(((((..((((.((((((((...((((....)))).......)))))))).))))..))))).)).)))))))))))........

Structure

--------    a       u  A     AC    C        ----guu    u 
        ggug uugaugg cA GUCGG  CGAG GCAAUGUU       ccuc a
        |||| ||||||| || |||||  |||| ||||||||       ||||  
        ccac aacuacu GU CGGCC  GUUC CGUUAUaa       ggag u
uacuaaaa    -       C  C     CU    A        gcuuuuu    u 

Annotation confidence Not enough data

Genome context

KN917153.1: 421925-422025 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from spu-mir-92b

Mature spu-miR-92b-3p

• Accession: MIMAT0009663
• Description: Strongylocentrotus purpuratus spu-miR-92b-3p mature miRNA
• Sequence: 61 - UAUUGCACUUGUCCCGGCCUGC - 82
• Evidence: experimental ; 454 [1], Illumina [2]

Mature spu-miR-92b-5p

• Accession: MIMAT0019160
• Description: Strongylocentrotus purpuratus spu-miR-92b-5p mature miRNA
• Sequence: 15 - AAGUCGGACCGAGCGCAAUGUU - 36
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68


2. PubMed ID: 21210939
   microRNA complements in deuterostomes: origin and evolution of microRNAs
   "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
   "Evol Dev (2011) 13:15-27


3. PubMed ID: 22216218
   RNA deep sequencing reveals differential microRNA expression during development of sea urchin and sea star
   Kadri S, Hinman VF, Benos PV
   PLoS One (2011) 6:e29217