Stem-loop spu-mir-2011

Accession

MI0010281

Description

Strongylocentrotus purpuratus spu-mir-2011 precursor miRNA

Gene family

MIPF0000739; mir-2011

Literature search

1 open access papers mention spu-mir-2011
(1 sentences)

Sequence

gcaccgugccuagucucccugcagucacuaccacaccuucgguggcuuuuuauagcuucACCAAGGUGUGCUAGUGAUGACagggggaugggaacaauca
.....((.((((.((((((((..(((((((.((((((((.(((((((......)))..)))))))))))).)))))))..)))))))))))).)).....

Structure

gcacc  g    g        ca       c        c    --   uu 
     gu ccua ucucccug  gucacua cacaccuu ggug  gcu  u
     || |||| ||||||||  ||||||| |||||||| ||||  |||   
     ca gggu agggggaC  UAGUGAU GUGUGGAA CCAc  cga  u
acuaa  a    -        AG       C        -    uu   ua 

Annotation confidence Not enough data

Genome context

KN918731.1: 274801-274900 [+]

Mature spu-miR-2011

• Accession: MIMAT0009752
• Description: Strongylocentrotus purpuratus spu-miR-2011 mature miRNA
• Sequence: 60 - ACCAAGGUGUGCUAGUGAUGAC - 81
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68


2. PubMed ID: 22216218
   RNA deep sequencing reveals differential microRNA expression during development of sea urchin and sea star
   Kadri S, Hinman VF, Benos PV
   PLoS One (2011) 6:e29217