Stem-loop sequence mtr-MIR1510a

Accession

MI0010542 (change log)

Description

Medicago truncatula miR1510a stem-loop

Gene family

MIPF0000703; MIR1510

Literature search

1 open access papers mention mtr-MIR1510a
(2 sentences)

Stem-loop

        ug   u      u     c     cau      c    cauaaa        a  u    c  c      u    cca 
5' aaagu  cua ugcaau guugu uuacc   uccucc aucc      ucuauuau ug acuc au aucaua ggau   c
   |||||  ||| |||||| ||||| |||||   |||||| ||||      |||||||| || |||| || |||||| ||||    
3' uuucg  gau acguua caaca aaugg   aggagg uagg      ggauagua gc ugag ua uaguau ucug   u
        --   u      u     a     auu      c    uucuaa        c  -    a  a      -    uuc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr5: 18616293-18616456 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR1510a

• mtr-MIR1510b: chr5: 18612353-18612588 [+]
• mtr-MIR1510a: chr5: 18616293-18616456 [+]
• mtr-MIR2592j: chr5: 18620902-18621150 [+]

Database links

• miRBase Tracker:MI0010542

Mature sequence mtr-miR1510a-5p

• Accession: MIMAT0010032
• Previous IDs: mtr-miR1510a*
• Sequence: 20 - uugucuuacccauuccuccca - 40
• Evidence: experimental; Illumina [1], Northern [1]

Mature sequence mtr-miR1510a-3p

• Accession: MIMAT0010033
• Previous IDs: mtr-miR1510a
• Sequence: 128 - cggaggauuagguaaaacaac - 148
• Evidence: experimental; Illumina [1], Northern [1], 454 [2]

References

1. PMID:19068109 "High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families" Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T BMC Genomics. 9:593(2008).
2. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).