Stem-loop osa-MIR396f

Accession

MI0010563

Description

Oryza sativa osa-MIR396f precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

54 open access papers mention osa-MIR396f
(138 sentences)

Sequence

2020 reads, 1410 reads per million, 2 experiments

gccaugcUCUCCACAGGCUUUCUUGAACUgugaacucgugugugcaugcuccucauauauuguucuagaucccaugcaugaugcauaucgaucgaucugaucugaauuaggucaucgaugcgcaucuggauccccaucuuguugAUAGUUCAAGAAAGUCCUUGGAAAacauggug
((((((...((((..((((((((((((((((.(((......(((((((.((..((.....)).....))...)))))))(((((.(((((((.((((((((....))))))))))))))).)))))(((....)))....))).))))))))))))))))..))))...)))))).

Structure

-      cUC    CA                g   ucgugugugcaugcuccucauauauuguucuagaucccaugcau     a       c        c 
 gccaug   UCCA  GGCUUUCUUGAACUgu aac                                            gaugc uaucgau gaucugau u
 ||||||   ||||  |||||||||||||||| |||                                            ||||| ||||||| ||||||||  
 ugguac   AGGU  CUGAAAGAACUUGAUA uug                                            cuacg guagcua cuggauua g
g      aAA    UC                g   ------------------------------uucuaccccuaggu     c       -        a 

Annotation confidence High

Genome context

Chr2: 35636546-35636721 [-]

Mature osa-miR396f-5p

• Accession: MIMAT0010070
• Description: Oryza sativa osa-miR396f-5p mature miRNA
• Sequence: 8 - UCUCCACAGGCUUUCUUGAACU - 29
• Evidence: experimental ; Illumina [1-2]

Mature osa-miR396f-3p

• Accession: MIMAT0015292
• Description: Oryza sativa osa-miR396f-3p mature miRNA
• Sequence: 145 - AUAGUUCAAGAAAGUCCUUGGAAA - 168
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435


2. PubMed ID: 19103661
   Characterization and expression profiles of miRNAs in rice seeds
   "Xue LJ, Zhang JJ, Xue HW"
   "Nucleic Acids Res (2009) 37:916-930