Stem-loop bra-MIR167b

Accession

MI0010653

Description

Brassica rapa bra-MIR167b precursor miRNA

Gene family

MIPF0000023; MIR167_1

Literature search

10 open access papers mention bra-MIR167b
(38 sentences)

Sequence

gguguacaggcaucugaUGAAGCUGCCAGCAUGAUCUAauuaacuuucuuucucuguugauuuuaugacaauggaaaagagaugagugucgauuagaucauguucgcaguuucacccauugacugucgcacc
(((((((((.((...(.(((((((((.((((((((((((((.(((((((((.(((((((.((....)))))))))..))))).))))...)))))))))))))).))))))))).)...)).)))).)))))

Structure

     -    g  ucu a         C              --a    -     -c       a  u 
ggugu acag ca   g UGAAGCUGC AGCAUGAUCUAauu   acuu ucuuu  ucuguug uu u
||||| |||| ||   | ||||||||| ||||||||||||||   |||| |||||  ||||||| ||  
ccacg uguc gu   c acuuugacg uuguacuagauuag   ugag agaga  agguaac ag a
     c    a  uac c         c              cug    u     aa       -  u 

Annotation confidence Not enough data

Genome context

chrA1: 19998656-19998787 [-]

Mature bra-miR167b

• Accession: MIMAT0010158
• Description: Brassica rapa bra-miR167b mature miRNA
• Sequence: 18 - UGAAGCUGCCAGCAUGAUCUA - 38
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 18558089
   Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica
   "He XF, Fang YY, Feng L, Guo HS"
   "FEBS Lett (2008) 582:2445-2452


2. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146