miRBase entry: ssc-mir-181a-1

Stem-loop ssc-mir-181a-1


Accession
MI0010686
Description
Sus scrofa ssc-mir-181a-1 precursor miRNA
Gene family
MIPF0000007; mir-181

Literature search
33 open access papers mention ssc-mir-181a-1
(179 sentences)

Sequence

5533 reads, 1447 reads per million, 15 experiments
gaguuuagagguugcuucagugAACAUUCAACGCUGUCGGUGAGUUuggaauucaaaucaaaaccaucgaccguugauuguacccuauggccaaccaucagcuc
(((((..(((((((((..((.(.(((.((((((..(((((((.((((.((.......)).))))))))))))))))).))).).))..)).))))).)))))))

Structure
     ua  -     -  uc  u A   U      CU       A    g  au 
gaguu  ga gguug cu  ag g ACA UCAACG  GUCGGUG GUUu ga  u
|||||  || ||||| ||  || | ||| ||||||  ||||||| |||| ||  c
cucga  cu ccaac gg  uc c ugu aguugc  cagcuac caaa cu  a
     --  a     c  ua  c a   u      --       -    a  aa 


Annotation confidence Not enough data
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Genome context
chr10: 26427018-26427121 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-181a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-181a

Accession MIMAT0010191
Description Sus scrofa ssc-miR-181a mature miRNA
Sequence 23 - AACAUUCAACGCUGUCGGUGAGUU - 46
Evidence experimental
Illumina [1,3-4], cloned [2]

References

  1. PubMed ID: 19196471
    Cloning, characterization and expression analysis of porcine microRNAs
    Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
    BMC Genomics (2009) 10:65

  2. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  3. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  4. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  5. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100