miRBase entry: 19196471

Cloning, characterization and expression analysis of porcine microRNAs

PubMed ID 19196471
Authors Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
Journal BMC Genomics
Volume 10
Pages 65

There are 272 miRNAs associated with this paper:
Name Accession RPM Chromosome Start End Strand Confidence
ssc-mir-122 MI0002413 4 chr1 179916336 179916420 - -
ssc-mir-181b-2 MI0002420 67 chr1 299324014 299324099 + -
ssc-mir-184 MI0002421 0 chr7 53883626 53883708 + -
ssc-mir-216-1 MI0002424 2 chr3 90058975 90059079 + -
ssc-mir-217-1 MI0002425 39 chr3 90065707 90065813 + -
ssc-mir-205 MI0002440 12 chr9 146808292 146808360 - -
ssc-let-7c MI0002445 389 chr13 191559336 191559429 + -
ssc-mir-107 MI0002449 81 chr14 110407095 110407181 - -
ssc-mir-124a-2 MI0002450 0 chr14 14443005 14443089 - -
ssc-mir-128-1 MI0002451 52 chr15 18661614 18661695 - -
ssc-mir-204 MI0002458 27 chr1 250527017 250527125 - -
ssc-mir-21 MI0002459 6294 chr12 37340385 37340476 + High
ssc-mir-30c-2 MI0002461 343 chr1 57721688 57721767 - -
ssc-mir-9-1 MI0002462 119 chr4 102543210 102543298 - -
ssc-mir-9-2 MI0002463 119 chr2 98744572 98744658 - -
ssc-mir-30b MI0008215 100 chr4 6717643 6717718 + -
ssc-mir-101-1 MI0010678 2388 chr1 242988419 242988509 - -
ssc-mir-101-2 MI0010679 2342 chr6 135736115 135736195 + -
ssc-mir-124a-1 MI0010680 0 chr4 76136453 76136557 - -
ssc-mir-133a-1 MI0010681 33 chr17 69274653 69274755 - -
ssc-mir-1 MI0010682 194 chr17 69285393 69285500 - -
ssc-mir-450a MI0010683 141 chrUScaf3177 4173 4278 + -
ssc-mir-503 MI0010684 48 None None -
ssc-mir-146b MI0010685 179 chr14 123301752 123301850 + -
ssc-mir-181a-1 MI0010686 1447 chr10 26427018 26427121 - -
ssc-mir-215 MI0010687 0 chr10 11786567 11786662 - -
ssc-mir-30a MI0010688 1861 chr1 57750736 57750842 - High
ssc-mir-133a-2 MI0015909 39 chr6 99485213 99485285 + -
hsa-let-7a-1 MI0000060 46519 chr9 94175957 94176036 + High
hsa-let-7a-2 MI0000061 46265 chr11 122146522 122146593 - High
hsa-let-7a-3 MI0000062 46706 chr22 46112749 46112822 + High
hsa-let-7b MI0000063 27396 chr22 46113686 46113768 + High
hsa-let-7c MI0000064 15711 chr21 16539828 16539911 + High
hsa-let-7d MI0000065 4366 chr9 94178834 94178920 + High
hsa-let-7e MI0000066 5118 chr19 51692786 51692864 + High
hsa-let-7f-1 MI0000067 65280 chr9 94176347 94176433 + High
hsa-let-7f-2 MI0000068 65395 chrX 53557192 53557274 - High
hsa-mir-15a MI0000069 3371 chr13 50049119 50049201 - High
hsa-mir-16-1 MI0000070 10398 chr13 50048973 50049061 - High
hsa-mir-17 MI0000071 12840 chr13 91350605 91350688 + High
hsa-mir-18a MI0000072 8032 chr13 91350751 91350821 + High
hsa-mir-19a MI0000073 9302 chr13 91350891 91350972 + High
hsa-mir-19b-1 MI0000074 12712 chr13 91351192 91351278 + High
hsa-mir-20a MI0000076 6826 chr13 91351065 91351135 + High
hsa-mir-22 MI0000078 2726 chr17 1713903 1713987 - High
hsa-mir-26a-1 MI0000083 11638 chr3 37969404 37969480 + High
hsa-mir-26b MI0000084 3586 chr2 218402646 218402722 + High
hsa-mir-98 MI0000100 616 chrX 53556223 53556341 - High
hsa-mir-101-1 MI0000103 3806 chr1 65058434 65058508 - High
hsa-mir-16-2 MI0000115 10575 chr3 160404745 160404825 + High
mmu-let-7g MI0000137 17749 chr9 106178840 106178927 + High
mmu-let-7i MI0000138 16255 chr10 122985640 122985724 - High
mmu-mir-1a-1 MI0000139 20001 chr2 180389048 180389124 + High
mmu-mir-15b MI0000140 1511 chr3 69009772 69009835 + High
mmu-mir-101a MI0000148 2654 chr4 101346945 101347027 - High
mmu-mir-126a MI0000153 6917 chr2 26591357 26591429 + High
mmu-mir-130a MI0000156 1739 chr2 84741115 84741178 - High
mmu-mir-133a-1 MI0000159 3209 chr18 10782909 10782976 - High
mmu-mir-142a MI0000167 7048 chr11 87756864 87756927 + -
mmu-mir-181a-2 MI0000223 7023 chr2 38852735 38852810 + High
mmu-mir-194-1 MI0000236 1251 chr1 185313319 185313385 + High
hsa-mir-208a MI0000251 424 chr14 23388596 23388666 - High
hsa-mir-30c-2 MI0000254 1554 chr6 71376960 71377031 - High
mmu-mir-122 MI0000256 6121 chr18 65248861 65248926 + High
mmu-mir-143 MI0000257 19717 chr18 61649196 61649258 - High
hsa-mir-181a-2 MI0000269 4211 chr9 124692442 124692551 + High
hsa-mir-181b-1 MI0000270 1441 chr1 198858873 198858982 - High
hsa-mir-181c MI0000271 322 chr19 13874699 13874808 + High
hsa-mir-181a-1 MI0000289 4186 chr1 198859044 198859153 - High
mmu-let-7d MI0000405 18752 chr13 48536012 48536114 - High
hsa-let-7g MI0000433 6904 chr3 52268278 52268361 - High
hsa-let-7i MI0000434 7403 chr12 62603686 62603769 + High
hsa-mir-1-2 MI0000437 5211 chr18 21829004 21829088 - High
hsa-mir-15b MI0000438 5285 chr3 160404588 160404685 + High
hsa-mir-122 MI0000442 3777 chr18 58451074 58451158 + High
hsa-mir-130a MI0000448 2307 chr11 57641198 57641286 + High
hsa-mir-133a-1 MI0000450 680 chr18 21825698 21825785 - High
hsa-mir-133a-2 MI0000451 684 chr20 62564912 62565013 + High
hsa-mir-142 MI0000458 4761 chr17 58331232 58331318 - High
hsa-mir-143 MI0000459 27646 chr5 149428918 149429023 + High
hsa-mir-126 MI0000471 4188 chr9 136670602 136670686 + High
hsa-mir-194-1 MI0000488 266 chr1 220118157 220118241 - -
mmu-mir-30c-1 MI0000547 1771 chr4 120769534 120769622 - High
mmu-mir-30c-2 MI0000548 1771 chr1 23291701 23291784 + High
mmu-mir-208a MI0000555 53 chr14 54949060 54949142 - High
mmu-let-7a-1 MI0000556 54921 chr13 48538179 48538272 - High
mmu-let-7a-2 MI0000557 54880 chr9 41536716 41536811 + High
mmu-let-7b MI0000558 17501 chr15 85707319 85707403 + High
mmu-let-7c-1 MI0000559 47495 chr16 77599657 77599750 + High
mmu-let-7c-2 MI0000560 47445 chr15 85706603 85706697 + High
mmu-let-7e MI0000561 4644 chr17 17830352 17830444 + High
mmu-let-7f-1 MI0000562 107727 chr13 48537829 48537917 - High
mmu-let-7f-2 MI0000563 108671 chrX 151912346 151912428 + High
mmu-mir-15a MI0000564 1860 chr14 61632027 61632110 - High
mmu-mir-16-1 MI0000565 6343 chr14 61631880 61631972 - High
mmu-mir-16-2 MI0000566 6356 chr3 69009902 69009996 + High
mmu-mir-18a MI0000567 1228 chr14 115043851 115043946 + High
mmu-mir-20a MI0000568 1950 chr14 115044157 115044263 + High
mmu-mir-22 MI0000570 10844 chr11 75463716 75463810 + High
mmu-mir-26a-1 MI0000573 8928 chr9 119031796 119031885 + High
mmu-mir-26b MI0000575 2699 chr1 74394310 74394394 + High
mmu-mir-29c MI0000577 875 chr1 195037547 195037634 + -
mmu-mir-98 MI0000586 767 chrX 151913214 151913321 + High
mmu-mir-326 MI0000598 121 chr7 99552269 99552363 + High
rno-mir-326 MI0000599 82 chr1 164518401 164518495 + -
rno-let-7d MI0000601 1221 chr17 16419980 16420077 + High
rno-mir-20a MI0000638 85 chr15 100180334 100180418 + High
rno-mir-101b MI0000648 1821 chr1 247263723 247263819 + High
mmu-mir-101b MI0000649 2519 chr19 29135279 29135375 + High
hsa-mir-1-1 MI0000651 5442 chr20 62554306 62554376 + High
mmu-mir-1a-2 MI0000652 19830 chr18 10785481 10785552 - High
hsa-mir-181b-2 MI0000683 1507 chr9 124693710 124693798 + High
mmu-mir-17 MI0000687 2249 chr14 115043671 115043754 + High
mmu-mir-19a MI0000688 839 chr14 115044000 115044081 + High
mmu-mir-181a-1 MI0000697 6982 chr1 137966455 137966541 + High
mmu-mir-26a-2 MI0000706 8956 chr10 126995530 126995613 + High
mmu-mir-19b-1 MI0000718 2437 chr14 115044305 115044391 + High
mmu-mir-181b-1 MI0000723 2023 chr1 137966639 137966718 + High
mmu-mir-181c MI0000724 830 chr8 84178873 84178961 - High
hsa-mir-194-2 MI0000732 297 chr11 64891355 64891439 - High
mmu-mir-194-2 MI0000733 1292 chr19 6264643 6264728 + High
hsa-mir-29c MI0000735 2141 chr1 207801852 207801939 - High
hsa-mir-30c-1 MI0000736 1532 chr1 40757284 40757372 + High
hsa-mir-101-2 MI0000739 3835 chr9 4850297 4850375 + High
hsa-mir-26a-2 MI0000750 11698 chr12 57824609 57824692 - High
hsa-mir-378a MI0000786 6859 chr5 149732825 149732890 + High
mmu-mir-378a MI0000795 10317 chr18 61397835 61397900 - High
hsa-mir-326 MI0000808 29 chr11 75335092 75335186 - -
mmu-mir-133a-2 MI0000820 3210 chr2 180398379 180398482 + High
mmu-mir-133b MI0000821 2787 chr1 20682769 20682887 + High
hsa-mir-133b MI0000822 266 chr6 52148923 52149041 + -
mmu-mir-181b-2 MI0000823 2033 chr2 38853830 38853918 + High
rno-let-7a-1 MI0000827 3545 chr17 16417853 16417946 + High
rno-let-7a-2 MI0000828 3492 chr8 45753264 45753359 + High
rno-let-7b MI0000829 1369 chr7 126590627 126590711 + High
rno-let-7c-1 MI0000830 4658 chr11 16052873 16052966 + High
rno-let-7c-2 MI0000831 5130 chr7 126590212 126590306 + High
rno-let-7e MI0000832 454 chr1 59704381 59704473 + High
rno-let-7f-1 MI0000833 10069 chr17 16418221 16418309 + High
rno-let-7f-2 MI0000834 9992 chrX 21583272 21583354 + High
rno-let-7i MI0000835 3479 chr7 66802731 66802815 + High
rno-mir-15b MI0000843 86 chr2 165605923 165606020 + High
rno-mir-16 MI0000844 5307 chr2 165606072 165606166 + High
rno-mir-17-1 MI0000845 120 chr15 100179879 100179962 + High
rno-mir-18a MI0000846 40 chr15 100180015 100180110 + High
rno-mir-19b-1 MI0000847 189 chr15 100180464 100180550 + High
rno-mir-19a MI0000849 64 chr15 100180162 100180243 + High
rno-mir-22 MI0000851 83171 chr10 62299592 62299686 + High
rno-mir-26a MI0000857 34513 chr8 127714441 127714530 + High
rno-mir-26b MI0000858 2546 chr9 81675275 81675359 + High
rno-mir-29c-1 MI0000865 334 chr1 38238904 38238991 + High
rno-mir-30c-1 MI0000866 4890 chr5 139699877 139699965 - High
rno-mir-30c-2 MI0000871 4454 chr9 29562376 29562459 + High
rno-mir-98 MI0000882 359 chrX 21583875 21583982 + High
rno-mir-101a MI0000886 2456 chr5 120168437 120168511 - High
rno-mir-122 MI0000891 3864 chr18 60755285 60755369 + High
rno-mir-126a MI0000898 5265 chr3 4042488 4042560 + High
rno-mir-130a MI0000903 353 chr3 72141037 72141124 - High
rno-mir-133a MI0000906 20425 chr18 2052478 2052564 - High
rno-mir-142 MI0000915 1356 chr10 75050839 75050925 + -
rno-mir-143 MI0000916 88004 chr18 56971273 56971377 - High
rno-mir-181c MI0000924 1797 chr19 25290211 25290316 - High
rno-mir-181a-2 MI0000925 27116 chr3 23150352 23150468 + High
rno-mir-181b-1 MI0000926 1521 chr13 54952903 54953012 + High
rno-mir-181b-2 MI0000927 1482 chr3 23151455 23151542 + High
rno-mir-194-1 MI0000937 2147 chr13 103250576 103250658 + High
rno-mir-194-2 MI0000938 1967 chr1 221634786 221634870 + High
rno-mir-208a MI0000949 193 chr15 33613451 33613533 - High
rno-mir-181a-1 MI0000953 27213 chr13 54952742 54952841 + High
hsa-mir-423 MI0001445 5810 chr17 30117079 30117172 + High
hsa-mir-18b MI0001518 1926 chrX 134170041 134170111 - High
hsa-mir-20b MI0001519 152 chrX 134169809 134169877 - High
hsa-mir-451a MI0001729 5013 chr17 28861369 28861440 - -
mmu-mir-451a MI0001730 9802 chr11 78073170 78073241 + -
rno-mir-451 MI0001731 441 chr10 65291204 65291275 - High
ssc-mir-15b MI0002419 66 chr13 108388133 108388230 + -
ssc-mir-19a MI0002422 635 chr11 66610343 66610424 + -
ssc-mir-20a MI0002423 736 chr11 66610513 66610583 + -
ssc-mir-26a MI0002429 1295 chrUScaf3878 40640 40723 + -
ssc-mir-326 MI0002434 0 chr9 10800191 10800281 - -
ssc-mir-181c MI0002438 119 chr2 65553664 65553750 - -
ssc-let-7f-1 MI0002446 1108 chrX 51801728 51801810 - -
ssc-let-7i MI0002447 995 chr5 30021224 30021308 + -
ssc-mir-18a MI0002455 46 chr11 66610195 66610286 + -
ssc-mir-29c MI0002460 123 chr9 148552997 148553084 + -
hsa-mir-484 MI0002468 612 chr16 15643294 15643372 + -
hsa-mir-181d MI0003139 306 chr19 13874875 13875011 + High
hsa-mir-499a MI0003183 1643 chr20 34990376 34990497 + High
rno-mir-1 MI0003489 205 chr18 2054933 2055019 - -
rno-mir-133b MI0003490 538 chr9 26795649 26795732 + High
mmu-mir-484 MI0003491 459 chr16 14159626 14159692 + -
mmu-mir-20b MI0003536 135 chrX 52742113 52742192 - High
rno-mir-20b MI0003554 38 chrX 140117518 140117589 - High
rno-mir-378a MI0003719 9439 chr18 56726150 56726214 - High
rno-mir-499 MI0003721 166 chr3 151138862 151138926 + High
mmu-mir-423 MI0004637 5149 chr11 77078064 77078172 - High
mmu-mir-499 MI0004676 273 chr2 155622880 155622958 + High
mmu-mir-181d MI0005450 754 chr8 84178716 84178787 - High
mmu-mir-18b MI0005483 141 chrX 52742331 52742413 - High
mmu-mir-208b MI0005552 76 chr14 54975700 54975776 - -
hsa-mir-208b MI0005570 312 chr14 23417987 23418063 - High
rno-mir-17-2 MI0006131 89 chrX 140117891 140117968 - High
rno-mir-181d MI0006132 1434 chr19 25290051 25290133 - High
rno-mir-423 MI0006145 520 chr10 63098366 63098444 + High
rno-mir-484 MI0006151 55 chr10 27845 27921 - -
mmu-mir-1b MI0006283 21 chr18 10785446 10785567 + High
ssc-mir-15a MI0008211 102 chrUScaf2048 70414 70492 + -
ssc-mir-16-2 MI0008212 274 chrUScaf2048 70557 70635 + -
ssc-mir-16-1 MI0008213 291 chr13 108388290 108388366 + -
ssc-mir-17 MI0008214 201 chr11 66610060 66610136 + -
ssc-mir-130a MI0008217 31 chr2 12929884 12929962 - -
ssc-let-7a-1 MI0013085 1026 chr9 54378059 54378138 - -
ssc-let-7e MI0013086 219 chr6 51858376 51858455 + -
ssc-let-7g MI0013087 6777 chr13 37599004 37599083 + -
ssc-mir-378-1 MI0013088 42 chr2 157640353 157640432 + -
ssc-mir-133b MI0013089 20 chr7 52430290 52430369 + -
ssc-mir-499 MI0013096 61 chr17 43571146 43571225 + -
ssc-mir-143 MI0013098 12545 chr2 157344738 157344817 + High
ssc-mir-423 MI0013099 474 chr12 48287019 48287098 - High
ssc-mir-181a-2 MI0013106 838 chr1 299322152 299322231 + -
ssc-mir-181b-1 MI0013107 83 chr10 26426857 26426936 - -
ssc-mir-181d MI0013108 43 chr2 65553487 65553566 - -
ssc-mir-98 MI0013122 200 chrX 51800864 51800943 - -
ssc-mir-208b MI0013129 0 chr7 81071323 81071402 - -
ssc-mir-142 MI0013134 378 chr12 36203916 36203995 + High
ssc-mir-19b-1 MI0013160 1155 chr11 66610642 66610721 + -
hsa-mir-378b MI0014154 37 chr3 10330229 10330285 + -
ssc-mir-22 MI0014770 249 None None High
rno-mir-126b MI0015433 8 chr3 4042464 4042581 - -
rno-mir-208b MI0015434 485 chr15 33639510 33639621 - High
rno-mir-133c MI0015456 0 chr18 2052459 2052576 + -
hsa-mir-378c MI0015825 4181 chr10 130962588 130962668 - -
ssc-mir-194b MI0015905 0 chr10 11786871 11786948 - -
ssc-mir-484 MI0015929 10 None None -
ssc-mir-30c-1 MI0016618 280 chr6 157473595 157473674 - -
ssc-mir-126 MI0016619 1833 chr1 313734669 313734741 + High
ssc-mir-378-2 MI0016622 38 chr12 38396700 38396767 + -
ssc-mir-451 MI0016623 851 chr12 47177114 47177178 + -
hsa-mir-378d-2 MI0003840 3410 chr8 93916022 93916119 - -
hsa-mir-378d-1 MI0016749 3385 chr4 5923275 5923328 - -
hsa-mir-378e MI0016750 246 chr5 170028488 170028566 + -
hsa-mir-378f MI0016756 31 chr1 23929070 23929147 + -
hsa-mir-378g MI0016761 30 None None -
hsa-mir-378h MI0016808 4 chr5 154829458 154829540 + -
hsa-mir-378i MI0016902 24 chr22 41923222 41923297 - -
mmu-mir-378b MI0016973 380 chr11 88352773 88352864 + -
mmu-mir-101c MI0016974 56 chr9 3038669 3038743 - -
hsa-mir-451b MI0017360 0 chr17 28861371 28861438 + -
hsa-mir-499b MI0017396 13 chr20 34990400 34990472 - -
ssc-let-7a-2 MI0017984 699 chr3 44864433 44864524 + -
ssc-mir-18b MI0017985 0 chrX 126200019 126200101 - -
hsa-mir-378j MI0021273 1 chr17 37614931 37615039 - -
rno-mir-378b MI0021540 13 chr5 5575616 5575699 - -
mmu-mir-133c MI0021863 0 chr2 29475215 29475294 - -
mmu-let-7j MI0021908 37 chr3 140028249 140028370 + -
mmu-mir-378c MI0021923 7927 chr14 46954830 46954928 - -
mmu-mir-378d MI0021951 16 chr10 126710282 126710391 - -
mmu-mir-451b MI0021960 4 chr11 78073170 78073241 - -
ssc-let-7d MI0022120 99 chr3 44867267 44867362 + -
ssc-let-7f-2 MI0022121 1058 chr3 44864800 44864896 + -
ssc-mir-20b-1 MI0022124 25 chrX 126199775 126199854 - -
ssc-mir-20b-2 MI0022125 25 None None -
ssc-mir-194a MI0022137 11 chr2 6416779 6416854 + -
mmu-let-7k MI0022352 67 chr5 147283189 147283298 - -
mmu-mir-126b MI0025035 10 chr2 26591363 26591420 - -
mmu-mir-142b MI0026028 2 chr11 87756841 87756955 - -
rno-let-7g MI0030347 2878 chr8 114874457 114874544 + High
rno-mir-15a MI0030352 277 None None High
ssc-mir-378b MI0031641 9 chr1 284932187 284932263 - -
rno-mir-29c-2 MI0031761 334 chr13 113782585 113782672 + High
rno-mir-1b MI0031785 374 chr3 175769716 175769800 + High
ssc-mir-26b MI0033397 261 chrUScaf756 56015 56079 + -



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