miRBase entry: sme-mir-2173

Stem-loop sme-mir-2173


Accession
MI0010818
Description
Schmidtea mediterranea sme-mir-2173 precursor miRNA


Sequence

acaauucuaguaaucaauggaAACAACUUGUAUAUGCAUACGUAuagaaagaaaacaauaUACAUGUACAUAUAAGUUGAAUUCauuguuauaaaaucauccga
.........((((.(((((((..((((((((((.(((((..(((((............)))))))))).))))))))))..)))))))))))............

Structure
---acaauucua    u       AA          A     AC     gaaag 
            guaa caaugga  CAACUUGUAU UGCAU  GUAua     a
            |||| |||||||  |||||||||| |||||  |||||      
            uauu guuaCUU  GUUGAAUAUA AUGUA  CAUau     a
agccuacuaaaa    -       AA          C     --     aacaa 


Annotation confidence Not enough data
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Genome context
Contig11322: 1540-1643 [-]

Database links

Mature sme-miR-2173-5p

Accession MIMAT0012164
Description Schmidtea mediterranea sme-miR-2173-5p mature miRNA
Sequence 22 - AACAACUUGUAUAUGCAUACGUA - 44
Evidence experimental
454 [1], Illumina [1-2]

Mature sme-miR-2173-3p

Accession MIMAT0011274
Description Schmidtea mediterranea sme-miR-2173-3p mature miRNA
Sequence 61 - UACAUGUACAUAUAAGUUGAAUUC - 84
Evidence experimental
454 [1], Illumina [1-2]

References

  1. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  2. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491