miRBase entry: sme-mir-754c-2

Stem-loop sme-mir-754c-2


Accession
MI0010946
Description
Schmidtea mediterranea sme-mir-754c-2 precursor miRNA
Gene family
MIPF0000749; mir-754


Sequence

auccacccagcauGUUGCUUGGGGUAUUACUAUauuuauuaauaUAGUUUUAUCUUCAUGCAAUAUCAgagguggaau
.(((((((.(.(((((((.(((((((..((((((((....))))))))..)))).))).)))))))).).))))))..

Structure
-a      - a c       U   -    UU        u 
  uccacc c g auGUUGC UGG GGUA  ACUAUauu a
  |||||| | | ||||||| ||| ||||  ||||||||  
  aggugg g C UAUAACG ACU CUAU  UGAUauaa u
ua      a A -       U   U    UU        u 


Annotation confidence Not enough data
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Genome context
Contig5823: 26722-26799 [+]

Database links

Mature sme-miR-754c-5p

Accession MIMAT0011237
Description Schmidtea mediterranea sme-miR-754c-5p mature miRNA
Sequence 14 - GUUGCUUGGGGUAUUACUAU - 33
Evidence experimental
Illumina [1-2], 454 [2]

Mature sme-miR-754c-2-3p

Accession MIMAT0013775
Description Schmidtea mediterranea sme-miR-754c-2-3p mature miRNA
Sequence 45 - UAGUUUUAUCUUCAUGCAAUAUCA - 68
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  2. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491