Stem-loop sequence sme-mir-2202

Accession

MI0010949 (change log)

Description

Schmidtea mediterranea miR-2202 stem-loop

Stem-loop

   ua      au      u   c    a   u         cuu  uua 
5'   aguugg  uugaua gcg aaaa gaa auuaaucga   ug   a
     ||||||  |||||| ||| |||| ||| |||||||||   ||    
3'   ucaacu  aauuau cgc uuuu cuu uaauuagcu   ac   u
   --      --      u   a    c   -         --c  uug 

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (WUSTL3.1)	Overlapping transcripts
Contig28205: 2579-2667 [-]	intergenic
Contig4044: 8966-9054 [+]	intergenic

Database links

• miRBase Tracker:MI0010949

Mature sequence sme-miR-2202-5p

• Accession: MIMAT0011417
• Previous IDs: sme-miR-2202
• Sequence: 17 - ugcgcaaaaagaauauuaaucga - 39
• Evidence: experimental; Illumina [1]

Mature sequence sme-miR-2202-3p

• Accession: MIMAT0011418
• Previous IDs: sme-miR-2202*
• Sequence: 58 - gauuaauuuccuuuuacgcuua - 79
• Evidence: experimental; Illumina [1]

References

1. PMID:19553344 "Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea" Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR RNA. 15:1483-1491(2009).