Stem-loop sequence crm-mir-64c

Accession MI0011091
Description Caenorhabditis remanei miR-64c stem-loop
Gene family MIPF0000967; mir-64_2
Stem-loop 
-     ---uuaacca a   -        a a         c    aa      -   auc 
 auaca          g ggc cucgccga u ugacacuga gcuu  uaugga ccg   u
 |||||          | ||| |||||||| | ||||||||| ||||  |||||| |||    
 uaugu          c ccg gagcggcu a acugugacu cgaa  auaccu ggc   c
u     uaaucccccg c   u        c a         -    -a      a   ccc
Get sequence
Deep sequencing
25 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
Crem_Contig41: 72317-72434 [+]
intergenic
Clustered miRNAs
< 10kb from crm-mir-64c
crm-mir-64a Crem_Contig41: 71965-72073 [+]
crm-mir-66 Crem_Contig41: 72081-72200 [+]
crm-mir-64b Crem_Contig41: 72225-72316 [+]
crm-mir-64c Crem_Contig41: 72317-72434 [+]
crm-mir-64d Crem_Contig41: 72472-72586 [+]
crm-mir-64e Crem_Contig41: 72615-72729 [+]

Mature sequence crm-miR-64c-5p

Accession MIMAT0011591
Previous IDs crm-miR-64c
Sequence

27 -  

uaugacacugacgcuuaauaugg

 - 49

Get sequence
Deep sequencing 25 reads, 1 experiments
Evidence experimental; 454 [1]

Mature sequence crm-miR-64c-3p

Accession MIMAT0011592
Previous IDs crm-miR-64c*
Sequence

68 -  

cauaaaagcucagugucaaacu

 - 89

Get sequence
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).