Stem-loop crm-mir-64c

Accession

MI0011091

Description

Caenorhabditis remanei crm-mir-64c precursor miRNA

Literature search

1 open access papers mention crm-mir-64c
(28 sentences)

Sequence

auacauuaaccagaggccucgccgaaUAUGACACUGACGCUUAAUAUGGaccgaucucccccggaucCAUAAAAGCUCAGUGUCAAACUcggcgagugccccgcccccuaauuguauu
((((((((....(.(((((((((((...(((((((((.((((..(((((((((........))).)))))).)))))))))))))...)))))))).))).)......))).))))).

Structure

-     -   --acca a   -        aUA         C    AA      -   auc 
 auaca uua      g ggc cucgccga   UGACACUGA GCUU  UAUGGa ccg   u
 ||||| |||      | ||| ||||||||   ||||||||| ||||  |||||| |||    
 uaugu aau      c ccg gagcggcU   ACUGUGACU CGAA  AUACcu ggc   c
u     u   cccccg c   u        CAA         -    -A      a   ccc 

Annotation confidence Low

Genome context

Crem_Contig41: 72317-72434 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from crm-mir-64c

Mature crm-miR-64c-5p

• Accession: MIMAT0011591
• Description: Caenorhabditis remanei crm-miR-64c-5p mature miRNA
• Sequence: 27 - UAUGACACUGACGCUUAAUAUGG - 49
• Evidence: experimental ; 454 [1]

Mature crm-miR-64c-3p

• Accession: MIMAT0011592
• Description: Caenorhabditis remanei crm-miR-64c-3p mature miRNA
• Sequence: 68 - CAUAAAAGCUCAGUGUCAAACU - 89
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074