Stem-loop crm-mir-64d

Accession

MI0011092

Description

Caenorhabditis remanei crm-mir-64d precursor miRNA

Gene family

MIPF0000295; mir-64

Literature search

1 open access papers mention crm-mir-64d
(17 sentences)

Sequence

ucagaguucagccgcccugcuugccagcUAUGACACUAAAGCGUAGCAUGGaccgauagauaagggaucCUGUUACCUGAGGUGUCAUGGCuggcuuuggguauccgugcuguga
(((.(((.(.(..((((.....(((((((((((((((..((.((((((.(((((..........)).)))))))))))..)))))))))))))))...))))..).).))).)))

Structure

   g   u a cc    ugcuu               AA  C      U   -  gaua 
uca agu c g  gccc     gccagcUAUGACACU  AG GUAGCA GGa cc    g
||| ||| | |  ||||     |||||||||||||||  || |||||| ||| ||     
agu ucg g c  uggg     cgguCGGUACUGUGG  UC CAUUGU Ccu gg    a
   g   u c ua    --uuu               AG  -      -   a  gaau 

Annotation confidence Not enough data

Genome context

Crem_Contig41: 72472-72586 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from crm-mir-64d

Mature crm-miR-64d-5p

• Accession: MIMAT0011593
• Description: Caenorhabditis remanei crm-miR-64d-5p mature miRNA
• Sequence: 29 - UAUGACACUAAAGCGUAGCAUGG - 51
• Evidence: experimental ; 454 [1]

Mature crm-miR-64d-3p

• Accession: MIMAT0011594
• Description: Caenorhabditis remanei crm-miR-64d-3p mature miRNA
• Sequence: 70 - CUGUUACCUGAGGUGUCAUGGC - 91
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074