miRBase entry: bta-mir-2300b

Stem-loop bta-mir-2300b


Accession
MI0011311
Description
Bos taurus bta-mir-2300b precursor miRNA
Gene family
MIPF0000770; mir-2300

Literature search
1 open access papers mention bta-mir-2300b
(1 sentences)

Sequence

70 reads, 10 reads per million, 33 experiments
ucuuauuccuuagcuaguuuugccucccugcuuaugaucacacacaGGGAGACAAAACUAGCUGAGGAauaaga
((((((((((((((((((((((.(((((((..............))))))).))))))))))))))))))))))

Structure
                      c       cuuaug 
ucuuauuccuuagcuaguuuug cucccug      a
|||||||||||||||||||||| |||||||       
agaauaAGGAGUCGAUCAAAAC GAGGGac      u
                      A       acacac 


Annotation confidence Not enough data
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Genome context
chr12: 31918146-31918219 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-2300b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-2300b-3p

Accession MIMAT0011810
Description Bos taurus bta-miR-2300b-3p mature miRNA
Sequence 47 - GGGAGACAAAACUAGCUGAGGA - 68
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 19633723
    Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection
    Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ
    PLoS One (2009) 4:e6349

  2. PubMed ID: 21912509
    Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
    "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
    "Int J Biol Sci (2011) 7:1016-1026