Stem-loop sequence dsi-mir-2582b

Accession

MI0011790

Description

Drosophila simulans miR-2582b stem-loop

Gene family

MIPF0000870; mir-2582

Stem-loop

a    u      c g              u   c   -  u 
 ccau cauauc u gagaguguucuuaa agu ugu ua u
 |||| |||||| | |||||||||||||| ||| ||| ||  
 ggua guauag a cuuucauaaggguu uca aca au a
-    -      - g              -   a   c  u 

Genome context

• Coordinates (dsim_r1.3_FB2010_02): X: 3273790-3273868 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dsi-mir-2582b

• dsi-mir-983: X: 3277334-3277453 [-]
• dsi-mir-303: X: 3275250-3275335 [-]
• dsi-mir-982a: X: 3274561-3274652 [-]
• dsi-mir-2582a: X: 3274401-3274516 [-]
• dsi-mir-982b: X: 3273921-3274024 [-]
• dsi-mir-2582b: X: 3273790-3273868 [-]
• dsi-mir-982c: X: 3273520-3273624 [-]

Mature sequence dsi-miR-2582b-5p

• Accession: MIMAT0012523
• Previous IDs: dsi-miR-2582b*
• Sequence: 14 - uggagaguguucuuaauagucu - 35
• Evidence: experimental; Solexa [1]

Mature sequence dsi-miR-2582b-3p

• Accession: MIMAT0012524
• Previous IDs: dsi-miR-2582b
• Sequence: 49 - aaacuuugggaauacuuucgag - 70
• Evidence: experimental; Solexa [1]

References

1. PMID:20037610 "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila" Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC Nat Genet. 42:6-9(2010).